Richard G. Posner - researchr alias

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Viewing Publication 1 - 8 from 8

2022

Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFitJacob Neumann, Yen-Ting Lin, Abhishek Mallela, Ely F. Miller, Joshua Colvin, Abell T. Duprat, Ye Chen, William S. Hlavacek, Richard G. Posner. bioinformatics, 38(6):1770-1772, 2022. [doi]

2019

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptorKeesha E. Erickson, Oleksii S. Rukhlenko, MD Shahinuzzaman, Kalina P. Slavkova, Yen-Ting Lin, Ryan Suderman, Edward C. Stites, Marian Anghel, Richard G. Posner, Dipak Barua, Boris N. Kholodenko, William S. Hlavacek. ploscb, 15(1), 2019. [doi]

2016

AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock VinaMathew R. Koebel, Grant Schmadeke, Richard G. Posner, Suman Sirimulla. jcheminf, 8(1), 2016. [doi]

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environmentsBrandon R. Thomas, Lily A. Chylek, Joshua Colvin, Suman Sirimulla, Andrew H. A. Clayton, William S. Hlavacek, Richard G. Posner. bioinformatics, 32(5):798-800, 2016. [doi]

2012

Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signalingMatthew S. Creamer, Edward C. Stites, Meraj Aziz, James A. Cahill, Chin Tan, Michael E. Berens, Haiyong Han, Kimberley J. Bussey, Daniel D. Von Hoff, William S. Hlavacek, Richard G. Posner. bmcsb, 6:107, 2012. [doi]

2010

RuleMonkey: software for stochastic simulation of rule-based modelsJoshua Colvin, Michael I. Monine, Ryan N. Gutenkunst, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner. bmcbi, 11:404, 2010. [doi]

2009

Simulation of large-scale rule-based modelsJoshua Colvin, Michael I. Monine, James R. Faeder, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner. bioinformatics, 25(7):910-917, 2009. [doi]

GetBonNie for building, analyzing and sharing rule-based modelsBin Hu, G. Matthew Fricke, James R. Faeder, Richard G. Posner, William S. Hlavacek. bioinformatics, 25(11):1457-1460, 2009. [doi]

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