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Viewing Publication 1 - 75 from 75

2012

Bioinformatics for Personalized Medicine - 10th Spanish Symposium, JBI 2010, Torremolinos, Spain, October 27-29, 2010. Revised Selected PapersAna T. Freitas, Arcadi Navarro, editors, Volume 6620 of Lecture Notes in Computer Science, Springer, 2012. [doi]

2010

An Ontology and a REST API for Sequence Based Microbial Typing DataJoão Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço. jbi 2012: 21-28 [doi]

GENote v.β: A Web Tool Prototype for Annotation of Unfinished Sequences in Non-model EukaryotesNoé Fernández-Pozo, Darío Guerrero-Fernández, Rocío Bautista, Josefa Gómez-Maldonado, Concepción Avila, Francisco M. Cánovas, M. Gonzalo Claros. jbi 2012: 66-71 [doi]

Bioinformatic Software Developments in SpainJosé M. Fernández, Alfonso Valencia. jbi 2012: 108-120 [doi]

iHOP Web Services FamilyJosé M. Fernández, Robert Hoffmann, Alfonso Valencia. jbi 2012: 102-107 [doi]

SB-KOM: Integration of Pathway Information with BioPaxMaría Jesús García-Godoy, Ismael Navas Delgado, José Francisco Aldana Montes. jbi 2012: 50-65 [doi]

Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep SequencingJuan González-Vallinas, Sonja Althammer, Eduardo Eyras. jbi 2012: 83-88 [doi]

jORCA and Magallanes Sailing Together towards Integration of Web ServicesTor Johan Mikael Karlsson, Oswaldo Trelles. jbi 2012: 94-101 [doi]

A Holistic Approach for Integrating Genomic Variation InformationPedro Lopes, José Luís Oliveira. jbi 2012: 42-49 [doi]

Novel Angiogenic Functional Targets Predicted through "Dark Matter" Assessment in Protein NetworksIan Morilla, Miguel A. Medina, Juan A. G. Ranea. jbi 2012: 89-93 [doi]

Application of Array-Oriented Scientific Data Formats (NetCDF) to Genotype Data, GWASpi as an ExampleFernando Muñiz-Fernandez, Angel Carreño-Torres, Carlos Morcillo-Suarez, Arcadi Navarro. jbi 2012: 8-20 [doi]

Statistical Significance for NGS Reads SimilaritiesAntonio Muñoz-Merida, Javier Ríos, Hicham Benzekri, Oswaldo Trelles. jbi 2012: 1-7 [doi]

Multivariate Methods for the Integration and Visualization of Omics DataAlex Sánchez, José Fernández-Real, Esteban Vegas, Francesc Carmona, Jacques Amar, Remy Burcelin, Matteo Serino, Francisco Tinahones, M. Carmen Ruíz de Villa, Antonio Minãrro, Ferran Reverter. jbi 2012: 29-41 [doi]

Interface Similarity Improves Comparison of DNA-Binding Proteins: The Homeobox ExampleÁlvaro Sebastián, Carlos P. Cantalapiedra, Bruno Contreras-Moreira. jbi 2012: 72-82 [doi]

2004

New Relations in the Edge Ideal Metrics Family for BiopolymersRicardo Alberich, Jairo Rocha. jbi 2004: 148-153

Infering Non-Neutral Evolution within the Context of a Growing Genomic Framework: Preliminary Results using Human-Chimp ProteomesLeonardo Arbiza, Joaquín Dopazo, Hernán Dopazo. jbi 2004: 92-99

UVCLUSTER: Searching For Regularities in Complex GraphsVicente Arnau, Sergio Mars, Ignacio Marín. jbi 2004: 53-55

What Works (and What Doesn t) in Estimating the Change in Free Energy due to Point Mutations in the Protein InteriorMarta Bueno, Carlos J. Camacho, Javier Sancho. jbi 2004: 20-22

The Long and Short Flavodoxins: Evolutionary Origin and Role of the Differentiating Loop in Apoflavodoxin StructureMarta Bueno, Jesus Tejero, Javier Sancho. jbi 2004: 76-79

Storage, Representation and Analysis of Nucleotide PolymorphismSònia Casillas, Natalia Petit, Raquel Egea, Antonio Barbadilla. jbi 2004: 137-141

Exploring the Phylogenetic Landscape of {P}roteobacteria using Phylogenomic ApproachesIñaki Comas, Andrés Moya, Fernando González-Candelas. jbi 2004: 40-42

Finding SNPs with Putative Phenotypic Effect at Transcriptional LevelLucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo. jbi 2004: 157-160

Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics ResearchAna Conesa, Stefan Götz, Juan Miguel García-Gómez, Montserrat Robles, Manuel Talón. jbi 2004: 211

maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray ExperimentsAna Conesa, María José Nueda, Alberto Ferrer, Manuel Talón. jbi 2004: 212

Simulation of the Notch Genetic Network during Early Development of the Vertebrate Inner EarAdrián López García de Lomana, Gina Abelló, Berta Alsina, Jordi Villà-Freixa. jbi 2004: 60-62

Investigating the Assignment of Probes to Transcripts in Affymetrix MicroarraysAlberto de Luis, Javier De Las Rivas. jbi 2004: 146-147

Variable Selection from Random Forests: Application to Gene Expression DataRamón Díaz-Uriarte. jbi 2004: 47-52

Can we Find Molecular Signatures from Gene Expression Data?Ramón Díaz-Uriarte, David Casado. jbi 2004: 173-178

Virtual Screening of Small Molecules Binding to an Engineered Protein Cavity in Flavodoxin using Freely Available Docking SoftwareJorge Estrada, Marta Bueno, Adrián Velázquez, Nunilo Cremades, Javier Sancho. jbi 2004: 179-181

Automatic Annotation of Alternative of Alternative Splicing in Eukaryotic GenomesEduardo Eyras. jbi 2004: 63-67

Prediction of Transcription Factor Binding Sites with PROMO v.3: Improving the Specificity of Weight Matrices and the Searching ProcessDomènec Farré, David García, M. Mar Albà, Xavier Messeguer. jbi 2004: 171-172

Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction SitesJuan Fernández-Recio. jbi 2004: 12-15

XML Databases, are Ready for Bioinformatics?José María Fernández, Alfonso Valencia. jbi 2004: 166-170

Annotation of Non-Human Pathological Mutations utilising Human-Parameterised Neural NetworksCarles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz. jbi 2004: 128-131

Investigating the 3D Conformation of N-Terminally Constrained OligopeptidesItizar Frades, Richard J. Edwards, Denis C. Shields. jbi 2004: 122-123

Artificial Chemistries and Metabolic PathwaysLiliana Félix, Francesc Rosselló, Gabriel Valiente. jbi 2004: 56-59

Proposal of a Minimal Genome for Bacterial LifeRosario Gil, Francisco J. Silva, Juli Peretó, Andrés Moya. jbi 2004: 25-29

Triplex-Forming Sequences in Regulatory RegionsJosep Ramon Goñi, Modesto Orozco. jbi 2004: 16-19

New Challenges in Gene Expression Data Analysis and the Extended GEPASJavier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo. jbi 2004: 1-5

Consensus Clustering and Functional Interpretation of Gene Expression DataPaul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu. jbi 2004: 6

On Supertrees of Phylogenetic TreesMercè Llabrés, Francesc Rosselló, Gabriel Valiente. jbi 2004: 142-145

A Bioinformatic Approach to the Comparative Study of Human and Mouse ProteomesSergio Lois, Xavier de la Cruz. jbi 2004: 119-121

A Web Based Suite of Tools for Microarray Quality Control and Data AnalysisJuanjo Lozano, David Otero, Belén Miñana, Eva González, Lauro Sumoy. jbi 2004: 194-195

AMarge: Automated Extensive Quality Assessment of Affymetrix ChipsJuan José Lozano, Susana G. Kalko. jbi 2004: 84-86

Properties of Genes involved in Human Genetic DiseaseNúria López-Bigas, Christos A. Ouzounis. jbi 2004: 45-46

Bioinformatic Analysis of Functional Characteristics of Enzymatic Active Centres using both Sequence and Structure Information: An Application to the Carnitine/Choline Acyltransferases Protein FamilyEduardo López-Viñas, Antonio G. Cordente, Montserrat Morillas, Fausto G. Hegardt, Paulino Gómez-Puertas. jbi 2004: 196-203

Detection of Functional Motifs in Biosequences: A Grammatical Inference ApproachDamián López, Antonio Cano, Manuel Vazquez de Parga, Belén Calles, José M. Sempere, Tomás Pérez, José Ruiz, Pedro García. jbi 2004: 72-75

Ordering BAC Clones from Fingerprint Data obtained through Four Enzymes Digestion and Fluorescent LabelingGiulio Marcon, Nicola Cannata, Mercè Llabrés, Marta Simeoni, Giorgio Valle. jbi 2004: 182-190

A Tool for Heuristic Detection of Association Clusters in Whole-Genome ScansTomàs Marquès-Bonet, Oscar Lao, Robert Goertsches, Manuel Comabella, Xavier Montalban, Arcadi Navarro. jbi 2004: 118

MutRes and LsdbRes: A Bioinformatics Platform for Mutation DatabasesPablo Marín-García, Heikki Lehväslaiho. jbi 2004: 100

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004Xavier Messeguer, Gabriel Valiente, editors, Technical University of Catalonia, Barcelona, 2004.

Semi-Empirical NMR-Based Protein Homology Modelling driven by Chemical Shift Back CalculationsDaniel Monleón, Vicent Esteve, Lucía Yim, Marta Martínez-Vicente, María-Eugenia Armengod, Bernardo Celda. jbi 2004: 23-24

A Web-Based Utility for High-Throughput SNP Data AnalysisCarlos Morcillo-Suarez, Josep Alegre, Marc Esteve, Jaume Bertranpetit, Francesc Calafell, Arcadi Navarro. jbi 2004: 113

Hydration Free Energy in MacromoleculesAntonio Morreale, Xavier de la Cruz, Tim Meyer, Josep Lluis Gelpí, F. Javier Luque, Modesto Orozco. jbi 2004: 206-207

The Novel Virus Genotyping Tool (STAR) and its Use in Subtyping Human Immunodeficiency Virus Type-1 and Hepatitis B VirusesRichard Myers, Catherine V. Gale, Caroline Clark, Julie Bennett, Richard S. Tedder, Ian G. Williams, Paul Kellam. jbi 2004: 44

A Study of the Impact of Sequence Variability in Protein CavitiesDavid Piedra, Miquel Calvo, Xavier de la Cruz. jbi 2004: 124-127

On the Analysis of the Intersection of the Interactome and the MetabolomeJoan Planas-Iglesias, Daniel Aguilar, Baldomero Oliva. jbi 2004: 68-69

On the Biological Relevance of Modules in Protein Interaction NetworksJuan F. Poyatos, Laurence D. Hurst. jbi 2004: 34-36

Integration and Comparison of Interactome DatabasesCarlos Prieto, Alberto de Luis, Javier De Las Rivas. jbi 2004: 80-83

Microeconomic Principles Explain an Optimal Genome Size in BacteriaJuan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo. jbi 2004: 43

Kernel-Based Fisher Discriminant Analysis for Microarray DataFerran Reverter, Esteban Vegas. jbi 2004: 87-91

Bioinformatic Analyses of the Dio Family of ProteinsAna María Rojas, Luis Sánchez-Pulido, Agnes Fütterer, Karel H. M. van Wely, Carlos Martínez-A, Alfonso Valencia. jbi 2004: 70-71

Codon Based Amino Acid Encoding for the Neural Network Prediction of Protein Secondary StructureJosé Santos. jbi 2004: 101-106

Highly Specific and Accurate Selection of siRNAs for High-Throughput Functional AssaysJavier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo. jbi 2004: 132-136

Assessment of Genetic Association using Haplotypes Inferred with UncertaintyXavier Solé, Raquel Iniesta, Elisabet Guinó, Joan Valls, Víctor Moreno. jbi 2004: 208-210

Bridging the Gap between Gene Expression and Physiological Phenotype: Is there still Room for Kinetic Models?Albert Sorribas, Ester Vilaprinyó. jbi 2004: 7-11

Comparative Study of MAPK 9 Alternative Splicing from Human and MouseDavid Talavera, Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz. jbi 2004: 114-117

Repetitive Extragenic Palindromic Sequences in Pseudomonas syringae pv./ tomato DC3000 GenomeRaquel Tobes, Eduardo Pareja. jbi 2004: 191-193

M-GCAT: Multiple Genome Comparison and Alignment ToolTodd J. Treangen, Xavier Messeguer. jbi 2004: 30-33

Comparison of Active Centers of Proteins: The Kinesin Family as a Test CaseAntoni Valencia, Martín Pérez, Adam Hospital, Joan Carles Fernández, Elena Manresa, Robert Soliva, Josep Lluis Gelpí, Modesto Orozco. jbi 2004: 205

The Gene Identification Problem from a Hypotheses Test PerspectiveMireia Vilardell, Alex Sánchez. jbi 2004: 107-112

Analysis of Evolutionary Patterns from Huge DNA Sequence DataAlbert J. Vilella, Angel Blanco-Garcia, Stephan Hutter, Julio Rozas. jbi 2004: 37-39

Fold Recognition using Residual Dipolar CouplingsJesús Villajos, Angel R. Ortiz. jbi 2004: 204

The Use of Weighted Least Squares Test Statistic in Branch and Topology TestingBorys Wróbel, Rafael Sanjuán, Andrés Moya, Fernando González-Candelas. jbi 2004: 154-156

An Approach to the Modular Structure of CancerÁlvaro Mateos, Joaquín Dopazo. jbi 2004: 161-165

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