Fátima Al-Shahrour - researchr alias

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Viewing Publication 1 - 29 from 29

2023

PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics dataMaría José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour. nar, 51(W1):411-418, July 2023. [doi]

2022

bollito: a flexible pipeline for comprehensive single-cell RNA-seq analysesLuis García-Jimeno, Coral Fustero Torre, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour. bioinformatics, 38(4):1155-1156, 2022. [doi]

2021

A comprehensive database for integrated analysis of omics data in autoimmune diseasesJordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez. bmcbi, 22(1):343, 2021. [doi]

CSVS, a crowdsourcing database of the Spanish population genetic variabilityMaría Peña-Chilet, Gema Roldán, Javier Perez-Florido, Francisco M. Ortuño, Rosario Carmona, Virginia Aquino, Daniel López-López, Carlos Loucera, Jose L. Fernandez-Rueda, Asunción Gallego, Francisco García-García 0002, Anna González-Neira, Guillermo Pita, Rocío Núñez-Torres, Javier Santoyo Lopez, Carmen Ayuso, Pablo Minguez, Almudena Avila-Fernandez, Marta Corton, Miguel Ángel Moreno-Pelayo, Matías Morin, Alvaro Gallego-Martinez, Jose A. Lopez-Escamez, Salud Borrego, Guillermo Antiñolo, Jorge Amigo, Josefa Salgado-Garrido, Sara Pasalodos-Sanchez, Beatriz Morte, Fátima Al-Shahrour, Rafael Artuch, Javier Benitez, Luis Antonio Castaño, Ignacio Del Castillo, Aitor Delmiro, Carmina Espinos, Roser González, Daniel Grinberg, Encarnación Guillén, Pablo Lapunzina, Esther López, Ramon Martí, Montserrat Milá, Jose M. Millán, Virginia Nunes, Francesc Palau, Belen Perez, Luis A. Pérez-Jurado, Rosario Perona, Aurora Pujol, Feliciano Ramos, Antonia Ribes, Jordi Rosell, Eulalia Rovira, Jordi Surrallés, Isabel Tejada, Magdalena Ugarte, Ángel Carracedo, Ángel Alonso, Joaquín Dopazo. nar, 49(Database-Issue), 2021. [doi]

DREIMT: a drug repositioning database and prioritization tool for immunomodulationKevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López. bioinformatics, 37(4):578-579, 2021. [doi]

2019

2010

Selection upon Genome Architecture: Conservation of Functional Neighborhoods with Changing GenesFátima Al-Shahrour, Pablo Minguez, Tomàs Marquès-Bonet, Elodie Gazave, Arcadi Navarro, Joaquín Dopazo. ploscb, 6(10), 2010. [doi]

2009

Ultrasome: efficient aberration caller for copy number studies of ultra-high resolutionBjörn Nilsson, Mikael Johansson, Fátima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert. bioinformatics, 25(8):1078-1079, 2009. [doi]

2007

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experimentsFátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo. nar, 35(Web-Server-Issue):91-96, 2007. [doi]

From genes to functional classes in the study of biological systemsFátima Al-Shahrour, Leonardo Arbiza, Hernán Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquín Dopazo. bmcbi, 8, 2007. [doi]

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profilingLucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo. nar, 35(Web-Server-Issue):81-85, 2007. [doi]

The AnnoLite and AnnoLyze programs for comparative annotation of protein structuresMarc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali. bmcbi, 8(S-4), 2007. [doi]

DBAli tools: mining the protein structure spaceMarc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali. nar, 35(Web-Server-Issue):393-397, 2007. [doi]

Functional profiling of microarray experiments using text-mining derived bioentitiesPablo Minguez, Fátima Al-Shahrour, David Montaner, Joaquín Dopazo. bioinformatics, 23(22):3098-3099, 2007. [doi]

2006

2005

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experimentsFátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo. nar, 33(Web-Server-Issue):460-464, 2005. [doi]

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological informationFátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo. bioinformatics, 21(13):2988-2993, 2005. [doi]

Ontologies and Functional GenomicsFátima Al-Shahrour, Joaquín Dopazo. In Francisco Azuaje, Joaquín Dopazo, editors, Data Analysis and Visualization in Genomics and Proteomics. pages 99-112, Wiley, 2005. [doi]

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression dataJuan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo. nar, 33(Web-Server-Issue):616-620, 2005. [doi]

2004

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genesFátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo. bioinformatics, 20(4):578-580, 2004. [doi]

Finding SNPs with Putative Phenotypic Effect at Transcriptional LevelLucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo. jbi 2004: 157-160

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional levelLucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo. nar, 32(Web-Server-Issue):242-248, 2004.

New Challenges in Gene Expression Data Analysis and the Extended GEPASJavier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo. jbi 2004: 1-5

New challenges in gene expression data analysis and the extended GEPASJavier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo. nar, 32(Web-Server-Issue):485-491, 2004.

2003

Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genesFátima Al-Shahrour, Javier Herrero, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo. nnsp 2003: 43-52 [doi]

GEPAS: a web-based resource for microarray gene expression data analysisJavier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo. nar, 31(13):3461-3467, 2003.

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