Journal: Algorithms for Molecular Biology

Volume 13, Issue 1

0 -- 0Alexander Donath, Peter F. Stadler. Split-inducing indels in phylogenomic analysis
0 -- 0Nidhi Shah, Stephen F. Altschul, Mihai Pop. Outlier detection in BLAST hits
0 -- 0Yves Frank, Tomas Hruz, Thomas Tschager, Valentin Venzin. Improved de novo peptide sequencing using LC retention time information
0 -- 0Samuele Girotto, Matteo Comin, Cinzia Pizzi. FSH: fast spaced seed hashing exploiting adjacent hashes
0 -- 0Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth. Time-consistent reconciliation maps and forbidden time travel
0 -- 0Md. Shamsuzzoha Bayzid, Tandy J. Warnow. Gene tree parsimony for incomplete gene trees: addressing true biological loss
0 -- 0Nidia Obscura Acosta, Veli Mäkinen, Alexandru I. Tomescu. A safe and complete algorithm for metagenomic assembly
0 -- 0Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow. OCTAL: Optimal Completion of gene trees in polynomial time
0 -- 0Fabian Gärtner, Lydia Müller, Peter F. Stadler. Superbubbles revisited
0 -- 0Morten Muhlig Nielsen, Paula Tataru, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen. Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments
0 -- 0Jingli Wu, Qian Zhang. A fast and accurate enumeration-based algorithm for haplotyping a triploid individual
0 -- 0Andre Rodrigues Oliveira, Guillaume Fertin, Ulisses Dias, Zanoni Dias. Sorting signed circular permutations by super short operations
0 -- 0Kazunori D. Yamada. Derivative-free neural network for optimizing the scoring functions associated with dynamic programming of pairwise-profile alignment
0 -- 0Fabian Gärtner, Christian Höner zu Siederdissen, Lydia Müller, Peter F. Stadler. Coordinate systems for supergenomes
0 -- 0Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki. Locus-aware decomposition of gene trees with respect to polytomous species trees
0 -- 0João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz. Fast phylogenetic inference from typing data
0 -- 0Pijus Simonaitis, Krister M. Swenson. Finding local genome rearrangements