Stephen F. Altschul - researchr alias

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Viewing Publication 1 - 21 from 21

2021

eCOMPASS: evaluative comparison of multiple protein alignments by statistical scoreAndrew F. Neuwald, Bryan D. Kolaczkowski, Stephen F. Altschul. bioinformatics, 37(20):3456-3463, 2021. [doi]

2018

Initial Cluster AnalysisStephen F. Altschul, Andrew F. Neuwald. jcb, 25(2):121-129, 2018. [doi]

Statistical investigations of protein residue direct couplingsAndrew F. Neuwald, Stephen F. Altschul. ploscb, 14(12), 2018. [doi]

Outlier detection in BLAST hitsNidhi Shah, Stephen F. Altschul, Mihai Pop. almob, 13(1), 2018. [doi]

2017

Outlier Detection in BLAST HitsNidhi Shah, Stephen F. Altschul, Mihai Pop. wabi 2017: [doi]

2016

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap PenaltiesAndrew F. Neuwald, Stephen F. Altschul. ploscb, 12(5), 2016. [doi]

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical CorrelationsAndrew F. Neuwald, Stephen F. Altschul. ploscb, 12(12), 2016. [doi]

2015

Log-odds sequence logosYi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul. bioinformatics, 31(3):324-331, 2015. [doi]

2013

Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein SpaceViet-An Nguyen, Jordan L. Boyd-Graber, Stephen F. Altschul. jcb, 20(1):1-18, 2013. [doi]

2011

On the Inference of Dirichlet Mixture Priors for Protein Sequence ComparisonXugang Ye, Yi-Kuo Yu, Stephen F. Altschul. jcb, 18(8):941-954, 2011. [doi]

An assessment of substitution scores for protein profile-profile comparisonXugang Ye, Guoli Wang, Stephen F. Altschul. bioinformatics, 27(24):3356-3363, 2011. [doi]

The Complexity of the Dirichlet Model for Multiple Alignment DataYi-Kuo Yu, Stephen F. Altschul. jcb, 18(8):925-939, 2011. [doi]

2010

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence AlignmentStephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu. ploscb, 6(7), 2010. [doi]

Compositional Adjustment of Dirichlet Mixture PriorsXugang Ye, Yi-Kuo Yu, Stephen F. Altschul. jcb, 17(12):1607-1620, 2010. [doi]

2008

The effectiveness of position- and composition-specific gap costs for protein similarity searchesAleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu. ismb 2008: 15-23 [doi]

2005

A structure-based method for protein sequence alignmentMaricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant. bioinformatics, 21(8):1451-1456, 2005. [doi]

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositionsYi-Kuo Yu, Stephen F. Altschul. bioinformatics, 21(7):902-911, 2005. [doi]

1999

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matricesAlejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul. bioinformatics, 15(12):1000-1011, 1999.

1994

A Gibbs Sampler for the Detection of Subtle Motifs in Multiple SequencesCharles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu. hicss 1994: 245-254

1991

BioSCAN: A VLSI-Based System for Biosequence AnalysisC. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul. iccd 1991: 504-509

1989

Leaf Pairs and Tree DissectionsStephen F. Altschul. siamdm, 2(3):293-299, 1989.

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