Journal: Briefings in Bioinformatics

Volume 13, Issue 3

269 -- 280Francesca Finotello, Enrico Lavezzo, Paolo Fontana, Denis Peruzzo, Alessandro Albiero, Luisa Barzon, Marco Falda, Barbara Di Camillo, Stefano Toppo. Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data
281 -- 291Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi. Gene set enrichment analysis: performance evaluation and usage guidelines
292 -- 304Anne-Laure Boulesteix, Andreas Bender, Justo Lorenzo Bermejo, Carolin Strobl. Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations
305 -- 316Norman Huang, Parantu K. Shah, Cheng Li. Lessons from a decade of integrating cancer copy number alterations with gene expression profiles
317 -- 328Xiyang Zhao, Chunfa Tong, Xiaoming Pang, Zhong Wang, Yunqian Guo, Fang Du, Rongling Wu. Functional mapping of ontogeny in flowering plants
329 -- 336Alfonso Benítez-Páez, Sonia Cárdenas-Brito, Andrés J. Gutiérrez. A practical guide for the computational selection of residues to be experimentally characterized in protein families
337 -- 349David duVerle, Hiroshi Mamitsuka. A review of statistical methods for prediction of proteolytic cleavage
350 -- 364Lianming Zhang, Keiko Udaka, Hiroshi Mamitsuka, Shanfeng Zhu. Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools
365 -- 376Rebekka Schlatter, Nicole Philippi, Gaby Wangorsch, Robert Pick, Oliver Sawodny, Christoph Borner, Jens Timmer, Michael Ederer, Thomas Dandekar. Integration of Boolean models exemplified on hepatocyte signal transduction
377 -- 382Juan Wang, Zhi-xin Li, Chengxiang Qiu, Dong Wang, Qinghua Cui. The relationship between rational drug design and drug side effects
383 -- 389Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro L. Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jimenez, Jane Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank. Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers
390 -- 392Li Shen. Principles of Computational Modeling in NeuroscienceDavid Sterratt, Bruce Graham, Andrew Gillies and David Willshaw