Charles DeLisi - researchr alias

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Viewing Publication 1 - 34 from 34

2021

The Mysterious Commonplace - A Life in ScienceCharles DeLisi. WorldScientific, 2021. [doi]

2016

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0Brian Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu. ploscb, 12(4), 2016. [doi]

2013

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapiesZhenjun Hu, Yi-Chien Chang, Yan Wang, Chia-Ling Huang, Yang Liu, Feng Tian, Brian Granger, Charles DeLisi. nar, 41(Webserver-Issue):225-231, 2013. [doi]

2012

The NIH National Center for Integrative Biomedical Informatics (NCIBI)Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi. jamia, 19(2):166-170, 2012. [doi]

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledgeChia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek. bmcbi, 13:46, 2012. [doi]

Gene set enrichment analysis: performance evaluation and usage guidelinesJui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi. bib, 13(3):281-291, 2012. [doi]

Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate CancerDaichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi. ploscb, 8(2), 2012. [doi]

2011

2010

Smoothing Gene Expression Using Biological NetworksYue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi. icmla 2010: 540-545 [doi]

2009

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontologyZhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi. nar, 37(Web-Server-Issue):115-121, 2009. [doi]

2008

2007

Portraits of breast cancer progressionGul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot. bmcbi, 8, 2007. [doi]

VisANT 3.0: new modules for pathway visualization, editing, prediction and constructionZhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi. nar, 35(Web-Server-Issue):625-632, 2007. [doi]

SVMotif: A Machine Learning Motif AlgorithmMark A. Kon, Yue Fan, Dustin T. Holloway, Charles DeLisi. icmla 2008: 573-580 [doi]

Learning Methods for DNA Binding in Computational BiologyMark A. Kon, Dustin T. Holloway, Yue Fan, Chaitanya Sai, Charles DeLisi. ijcnn 2007: 2358-2365 [doi]

Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding SitesTimothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich. ploscb, 3(5), 2007. [doi]

2006

2005

Discovery and Annotation of Genetic ModulesCharles DeLisi. recomb 2005: 188-188 [doi]

VisANT: data-integrating visual framework for biological networks and modulesZhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi. nar, 33(Web-Server-Issue):352-357, 2005. [doi]

2004

VisANT: an online visualization and analysis tool for biological interaction dataZhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi. bmcbi, 5:17, 2004. [doi]

2003

ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observationsBoris E. Shakhnovich, John M. Harvey, Steve Comeau, David Lorenz, Charles DeLisi, Eugene I. Shakhnovich. bmcbi, 4:34, 2003. [doi]

Identification of functional links between genes using phylogenetic profilesJie Wu, Simon Kasif, Charles DeLisi. bioinformatics, 19(12):1524-1530, 2003.

2002

A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c.Rhonda Harrison, Charles DeLisi. SAC 2002: 151-158 [doi]

Condition specific transcription factor binding site characterization in Saccharomyces cerevisiaeRhonda Harrison, Charles DeLisi. bioinformatics, 18(10):1289-1296, 2002.

Predictome: a database of putative functional links between proteinsJoseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi. nar, 30(1):306-309, 2002.

1999

Computational problems in cell biologyCharles DeLisi, Sandor Vajda. cse, 1(3):26-32, 1999. [doi]

1996

Peptide docking using dynamic programmingKamalakar Gulukota, Sandor Vajda, Charles DeLisi. jcc, 17(4):418-428, 1996. [doi]

1993

Loop closure via bond scaling and relaxationQiang Zheng, Rakefet Rosenfeld, Sandor Vajda, Charles DeLisi. jcc, 14(5):556-565, 1993. [doi]

1984

Computer analysis and structure prediction of nucleic acids and proteinsMinoru Kanehisa, P. Klein, P. Greif, Charles DeLisi. nar, 12(1):417-428, 1984.

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Publications by 'Charles DeLisi'

Viewing Publication 1 - 34 from 34

2021

2016

2013

2012

2011

2010

2009

2008

2007

2006

2005

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2002

1999

1996

1993

1984

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