1857 | -- | 1874 | Xiaoxia Ma, Yijun Meng, Pu Wang, Zhonghai Tang, Huizhong Wang, Tian Xie. Bioinformatics-assisted, integrated omics studies on medicinal plants |
1875 | -- | 1885 | Ehsan Ullah, Mona Yosafshahi, Soha Hassoun. Towards scaling elementary flux mode computation |
1886 | -- | 1903 | Hongcheng Yao, Qian Liang, Xinyi Qian, Junwen Wang, Pak Chung Sham, Mulin Jun Li. Methods and resources to access mutation-dependent effects on cancer drug treatment |
1904 | -- | 1919 | Riccardo De Bin, Anne-Laure Boulesteix, Axel Benner, Natalia Becker, Willi Sauerbrei. Combining clinical and molecular data in regression prediction models: insights from a simulation study |
1920 | -- | 1936 | Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj. A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping |
1937 | -- | 1953 | Jussi Paananen, Vittorio Fortino. An omics perspective on drug target discovery platforms |
1954 | -- | 1970 | Yiwen Wang, Kim-Anh Lê Cao. Managing batch effects in microbiome data |
1971 | -- | 1986 | Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole. Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data |
1987 | -- | 1998 | Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti, Roberta Bosotti. A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data |
1999 | -- | 2010 | Fabian Kern, Christina Backes, Pascal Hirsch, Tobias Fehlmann, Martin Hart, Eckart Meese, Andreas Keller. What's the target: understanding two decades of in silico microRNA-target prediction |
2011 | -- | 2030 | Morgane Pierre-Jean, Jean-Francois Deleuze, Edith Le Floch, Florence Mauger. Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration |
2031 | -- | 2051 | Bohdan B. Khomtchouk, Diem-Trang T. Tran, Kasra A. Vand, Matthew Might, Or Gozani, Themistocles L. Assimes. Cardioinformatics: the nexus of bioinformatics and precision cardiology |
2052 | -- | 2065 | Arfa Mehmood, Asta Laiho, Mikko S. Venäläinen, Aidan J. McGlinchey, Ning Wang, Laura L. Elo. Systematic evaluation of differential splicing tools for RNA-seq studies |
2066 | -- | 2083 | Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, SiYuan Zheng, Yufei Huang, Yidong Chen. Deep learning of pharmacogenomics resources: moving towards precision oncology |
2084 | -- | 2098 | Jun Sun, Qianqian Shi, Xi Chen, Rong Liu. Decoding the similarities and specific differences between latent and active tuberculosis infections based on consistently differential expression networks |
2099 | -- | 2111 | Xuan Lin, Zhe Quan, Zhi-jie Wang, Huang Huang, Xiangxiang Zeng. A novel molecular representation with BiGRU neural networks for learning atom |
2112 | -- | 2125 | Süleyman Selim Çinaroglu, Emel Timuçin. Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets |
2126 | -- | 2132 | Xiao Ding, Xuye Yuan, Longfei Mao, Aiping Wu, Taijiao Jiang. FluReassort: a database for the study of genomic reassortments among influenza viruses |
2133 | -- | 2141 | Chen-Chen Li, Bin Liu. MotifCNN-fold: protein fold recognition based on fold-specific features extracted by motif-based convolutional neural networks |
2142 | -- | 2152 | Qingxia Yang, Jiajun Hong, Yi Li, Weiwei Xue, Song Li, Hui Yang, Feng Zhu 0004. A novel bioinformatics approach to identify the consistently well-performing normalization strategy for current metabolomic studies |
2153 | -- | 2166 | Yanjun Xu, Tan Wu, Feng Li, Qun Dong, Jingwen Wang, Desi Shang, Yingqi Xu, Chunlong Zhang, Yiying Dou, Congxue Hu, Haixiu Yang, Xuan Zheng, Yunpeng Zhang, Lihua Wang 0002, Xia Li 0004. Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer |
2167 | -- | 2174 | Qun Dong, Feng Li, Yanjun Xu, Jing Xiao, Yingqi Xu, Desi Shang, Chunlong Zhang, Haixiu Yang, Zihan Tian, Kai Mi 0003, Xia Li 0004, Yunpeng Zhang. RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data |
2175 | -- | 2184 | Yao Lv, Sheng-Yan Lin, Fei-Fei Hu, Zheng Ye, Qiong Zhang, Yan Wang, An-Yuan Guo. Landscape of cancer diagnostic biomarkers from specifically expressed genes |
2185 | -- | 2193 | Bin Liu, Yulin Zhu, Ke Yan 0003. Fold-LTR-TCP: protein fold recognition based on triadic closure principle |
2194 | -- | 2205 | Kequan Lin, Lu Li, Yifei Dai, Huili Wang, Shuaishuai Teng, Xilinqiqige Bao, Zhi John Lu, Dong Wang. A comprehensive evaluation of connectivity methods for L1000 data |
2206 | -- | 2218 | Jing-Fang Yang, Fan Wang, Yu Zong Chen, Ge-Fei Hao, Guangfu Yang. LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor |
2219 | -- | 2238 | Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu. Biomedical named entity recognition and linking datasets: survey and our recent development |