Journal: Briefings in Bioinformatics

Volume 21, Issue 6

1857 -- 1874Xiaoxia Ma, Yijun Meng, Pu Wang, Zhonghai Tang, Huizhong Wang, Tian Xie. Bioinformatics-assisted, integrated omics studies on medicinal plants
1875 -- 1885Ehsan Ullah, Mona Yosafshahi, Soha Hassoun. Towards scaling elementary flux mode computation
1886 -- 1903Hongcheng Yao, Qian Liang, Xinyi Qian, Junwen Wang, Pak Chung Sham, Mulin Jun Li. Methods and resources to access mutation-dependent effects on cancer drug treatment
1904 -- 1919Riccardo De Bin, Anne-Laure Boulesteix, Axel Benner, Natalia Becker, Willi Sauerbrei. Combining clinical and molecular data in regression prediction models: insights from a simulation study
1920 -- 1936Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj. A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
1937 -- 1953Jussi Paananen, Vittorio Fortino. An omics perspective on drug target discovery platforms
1954 -- 1970Yiwen Wang, Kim-Anh Lê Cao. Managing batch effects in microbiome data
1971 -- 1986Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole. Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data
1987 -- 1998Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti, Roberta Bosotti. A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data
1999 -- 2010Fabian Kern, Christina Backes, Pascal Hirsch, Tobias Fehlmann, Martin Hart, Eckart Meese, Andreas Keller. What's the target: understanding two decades of in silico microRNA-target prediction
2011 -- 2030Morgane Pierre-Jean, Jean-Francois Deleuze, Edith Le Floch, Florence Mauger. Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration
2031 -- 2051Bohdan B. Khomtchouk, Diem-Trang T. Tran, Kasra A. Vand, Matthew Might, Or Gozani, Themistocles L. Assimes. Cardioinformatics: the nexus of bioinformatics and precision cardiology
2052 -- 2065Arfa Mehmood, Asta Laiho, Mikko S. Venäläinen, Aidan J. McGlinchey, Ning Wang, Laura L. Elo. Systematic evaluation of differential splicing tools for RNA-seq studies
2066 -- 2083Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, SiYuan Zheng, Yufei Huang, Yidong Chen. Deep learning of pharmacogenomics resources: moving towards precision oncology
2084 -- 2098Jun Sun, Qianqian Shi, Xi Chen, Rong Liu. Decoding the similarities and specific differences between latent and active tuberculosis infections based on consistently differential expression networks
2099 -- 2111Xuan Lin, Zhe Quan, Zhi-jie Wang, Huang Huang, Xiangxiang Zeng. A novel molecular representation with BiGRU neural networks for learning atom
2112 -- 2125Süleyman Selim Çinaroglu, Emel Timuçin. Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets
2126 -- 2132Xiao Ding, Xuye Yuan, Longfei Mao, Aiping Wu, Taijiao Jiang. FluReassort: a database for the study of genomic reassortments among influenza viruses
2133 -- 2141Chen-Chen Li, Bin Liu. MotifCNN-fold: protein fold recognition based on fold-specific features extracted by motif-based convolutional neural networks
2142 -- 2152Qingxia Yang, Jiajun Hong, Yi Li, Weiwei Xue, Song Li, Hui Yang, Feng Zhu 0004. A novel bioinformatics approach to identify the consistently well-performing normalization strategy for current metabolomic studies
2153 -- 2166Yanjun Xu, Tan Wu, Feng Li, Qun Dong, Jingwen Wang, Desi Shang, Yingqi Xu, Chunlong Zhang, Yiying Dou, Congxue Hu, Haixiu Yang, Xuan Zheng, Yunpeng Zhang, Lihua Wang 0002, Xia Li 0004. Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer
2167 -- 2174Qun Dong, Feng Li, Yanjun Xu, Jing Xiao, Yingqi Xu, Desi Shang, Chunlong Zhang, Haixiu Yang, Zihan Tian, Kai Mi 0003, Xia Li 0004, Yunpeng Zhang. RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data
2175 -- 2184Yao Lv, Sheng-Yan Lin, Fei-Fei Hu, Zheng Ye, Qiong Zhang, Yan Wang, An-Yuan Guo. Landscape of cancer diagnostic biomarkers from specifically expressed genes
2185 -- 2193Bin Liu, Yulin Zhu, Ke Yan 0003. Fold-LTR-TCP: protein fold recognition based on triadic closure principle
2194 -- 2205Kequan Lin, Lu Li, Yifei Dai, Huili Wang, Shuaishuai Teng, Xilinqiqige Bao, Zhi John Lu, Dong Wang. A comprehensive evaluation of connectivity methods for L1000 data
2206 -- 2218Jing-Fang Yang, Fan Wang, Yu Zong Chen, Ge-Fei Hao, Guangfu Yang. LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor
2219 -- 2238Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu. Biomedical named entity recognition and linking datasets: survey and our recent development