| 1119 | -- | 1135 | Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, A. Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song. A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction |
| 1136 | -- | 1150 | Vincent Briane, Myriam Vimond, Charles Kervrann. An overview of diffusion models for intracellular dynamics analysis |
| 1151 | -- | 1163 | Asmita Gupta, Manju Bansal. RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structures |
| 1164 | -- | 1181 | Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi. Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data |
| 1182 | -- | 1195 | Andrew C. Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W. Johnson, Fahad Abdu, Shivani Kamath Belman, Benjamin S. Glicksberg, Pratyush Tandale, Roberto Fontanez, Oommen K. Mathew, Andrew Kasarskis, Priyabrata Mukherjee, Lakshminarayanan Subramanian, Joel T. Dudley, Khader Shameer. Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses |
| 1196 | -- | 1208 | Ren Qi, Anjun Ma, Qin Ma, Quan Zou 0001. Clustering and classification methods for single-cell RNA-sequencing data |
| 1209 | -- | 1223 | Raphael Petegrosso, Zhuliu Li, Rui Kuang. Machine learning and statistical methods for clustering single-cell RNA-sequencing data |
| 1224 | -- | 1237 | Dimitri Guala, Christoph Ogris, Nikola Müller, Erik L. L. Sonnhammer. Genome-wide functional association networks: background, data & state-of-the-art resources |
| 1238 | -- | 1248 | Fu Chen, Le Yuan, Shaozhen Ding, Yu Tian, Qian-Nan Hu. Data-driven rational biosynthesis design: from molecules to cell factories |
| 1249 | -- | 1260 | David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider 0002. Closing the gap between formats for storing layout information in systems biology |
| 1261 | -- | 1276 | Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye 0002, Yaru Su, Xiaohui Wu. A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data |
| 1277 | -- | 1284 | Sean D. McCabe, Dan-Yu Lin, Michael I Love. Consistency and overfitting of multi-omics methods on experimental data |
| 1285 | -- | 1292 | Jianwen Fang. A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation |
| 1293 | -- | 1301 | Hewei Zheng, Xueying Zhao, Hong Wang, Yu Ding, Xiaoyan Lu, Guosi Zhang, Jiaxin Yang, Lianzong Wang, Haotian Zhang, Yu Bai, Jing Li, Jingqi Wu, Yongshuai Jiang, Liangde Xu. Location deviations of DNA functional elements affected SNP mapping in the published databases and references |
| 1302 | -- | 1312 | Mitra Ebrahimpoor, Pietro Spitali, Kristina M. Hettne, Roula Tsonaka, Jelle J. Goeman. Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods |
| 1313 | -- | 1326 | Juan Cui, Jiang Shu. Circulating microRNA trafficking and regulation: computational principles and practice |
| 1327 | -- | 1346 | Pingjian Ding, Wenjue Ouyang, Jiawei Luo, Chee-Keong Kwoh 0001. Heterogeneous information network and its application to human health and disease |
| 1347 | -- | 1355 | Chaodong Zhang, Yingjiao Ju, Na Tang, Yun Li, Gang Zhang, Yuqin Song, Hailing Fang, Liang Yang, Jie Feng. Systematic analysis of supervised machine learning as an effective approach to predicate β-lactam resistance phenotype in Streptococcus pneumoniae |
| 1356 | -- | 1367 | Hang Wei, Bin Liu. iCircDA-MF: identification of circRNA-disease associations based on matrix factorization |
| 1368 | -- | 1377 | Dan Wang, Hai Xiang, Chao Ning, Hao Liu, Jian-feng Liu, Xingbo Zhao. Mitochondrial DNA enrichment reduced NUMT contamination in porcine NGS analyses |
| 1378 | -- | 1390 | Jing Tang, Yunxia Wang, Jianbo Fu, Ying Zhou, Yongchao Luo, Ying Zhang, Bo Li, Qingxia Yang, Weiwei Xue, Yan Lou, Yunqing Qiu, Feng Zhu 0004. A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies |
| 1391 | -- | 1396 | Meik Kunz, Beat Wolf, Maximilian Fuchs, Jan Christoph, Ke Xiao, Thomas Thum, David Atlan, Hans-Ulrich Prokosch, Thomas Dandekar. A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs |
| 1397 | -- | 1410 | Hebing Chen, Zhuo Zhang, Shuai Jiang, Ruijiang Li, Wanying Li, Chenghui Zhao, Hao Hong, Xin Huang, Hao Li 0035, Xiaochen Bo. New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform |
| 1411 | -- | 1424 | Meng Li, Jianmei Zhao, Xuecang Li, Yang Chen, Chenchen Feng, Fengcui Qian, Yuejuan Liu, Jian Zhang, Jianzhong He, Bo Ai, Ziyu Ning, Wei Liu, Xuefeng Bai, Xiaole Han, Zhiyong Wu, Xiue Xu, Zhidong Tang, Qi Pan, Liyan Xu, Chunquan Li, Qiuyu Wang, Enmin Li. HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures |
| 1425 | -- | 1436 | Xiangxiang Zeng, Yue Zhong, Wei Lin, Quan Zou 0001. Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods |
| 1437 | -- | 1447 | Jiajun Hong, Yongchao Luo, Yang Zhang, Junbiao Ying, Weiwei Xue, Tian Xie, Lin Tao, Feng Zhu 0004. Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning |
| 1448 | -- | 1454 | Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu. Data imbalance in CRISPR off-target prediction |
| 1455 | -- | 1464 | JunCai Pu, Yue Yu, Yiyun Liu, Lu Tian, Siwen Gui, Xiaogang Zhong, Chu Fan, Shaohua Xu, Xuemian Song, Lanxiang Liu, Lining Yang, Peng Zheng, Jianjun Chen, Ke Cheng, Chanjuan Zhou, Haiyang Wang, Peng Xie. MENDA: a comprehensive curated resource of metabolic characterization in depression |
| 1465 | -- | 1478 | Aimin Li, Peilin Jia, Saurav Mallik, Rong Fei, Hiroki Yoshioka, Akiko Suzuki, Junichi Iwata, Zhongming Zhao. Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice |
| 1479 | -- | 1486 | Jie Ping, Olufunmilola Oyebamiji, Hui Yu, Scott Ness, Jeremy Chien, Fei Ye, Huining Kang, David C. Samuels, Sergey Ivanov, Danqian Chen, Ying-Yong Zhao, Yan Guo. MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data |
| 1487 | -- | 1494 | José A. Ferreira, Susana Fuentes. Some comments on certain statistical aspects of the study of the microbiome |