| 1 | -- | 10 | Quan Zou 0001, Gang Lin, Xingpeng Jiang, Xiangrong Liu, Xiangxiang Zeng. Sequence clustering in bioinformatics: an empirical study |
| 11 | -- | 23 | Xiaoli Qiang, Chen Zhou, Xiucai Ye, Pufeng Du, Ran Su, Leyi Wei. CPPred-FL: a sequence-based predictor for large-scale identification of cell-penetrating peptides by feature representation learning |
| 24 | -- | 35 | Mark N. Read, Kieran Alden, Jon Timmis, Paul S. Andrews. Strategies for calibrating models of biology |
| 36 | -- | 46 | Sangsoo Lim, Sangseon Lee, Inuk Jung, SungMin Rhee, Sun Kim. Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data |
| 47 | -- | 61 | Xing Chen, Na-Na Guan, Ya-Zhou Sun, Jian-qiang Li, Jia Qu. MicroRNA-small molecule association identification: from experimental results to computational models |
| 62 | -- | 72 | Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein. Human-like layout algorithms for signalling hypergraphs: outlining requirements |
| 73 | -- | 84 | Liu Qin, Yanhong Liu, Menglong Li, Xuemei Pu, Yanzhi Guo. The landscape of miRNA-related ceRNA networks for marking different renal cell carcinoma subtypes |
| 85 | -- | 95 | Hong Wang, Xiaoyan Lu, Fukun Chen, Yu Ding, Hewei Zheng, Lianzong Wang, Guosi Zhang, Jiaxin Yang, Yu Bai, Jing Li, Jingqi Wu, Meng Zhou, Liangde Xu. Landscape of SNPs-mediated lncRNA structural variations and their implication in human complex diseases |
| 96 | -- | 105 | Jamie J. Alnasir, Hugh P. Shanahan. The application of Hadoop in structural bioinformatics |
| 106 | -- | 119 | Leyi Wei, Jie Hu, Fuyi Li, Jiangning Song, Ran Su, Quan Zou 0001. Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms |
| 120 | -- | 134 | Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu 0003. A comprehensive review of computational prediction of genome-wide features |
| 135 | -- | 143 | Qinjie Chu, Panpan Bai, Xintian Zhu, Xingchen Zhang, Lingfeng Mao 0002, Qian-Hao Zhu, Longjiang Fan, Chu-Yu Ye. Characteristics of plant circular RNAs |
| 144 | -- | 155 | Emile R. Chimusa, Joel Defo, Prisca K. Thami, Denis Awany, Delesa D. Mulisa, Imane Allali, Hassan Ghazal, Ahmed Moussa, Gaston K. Mazandu. Dating admixture events is unsolved problem in multi-way admixed populations |
| 156 | -- | 170 | Haitao Yang, Hongyan Cao, Tao He, Tong Wang, Yuehua Cui. Multilevel heterogeneous omics data integration with kernel fusion |
| 171 | -- | 181 | Chuan Dong, Yan-Ting Jin, Hong-Li Hua, Qing-Feng Wen, Sen Luo, Wen-Xin Zheng, Feng-Biao Guo. Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment |
| 182 | -- | 197 | Chang Su, Jie Tong, Yongjun Zhu, Peng Cui 0001, Fei Wang 0001. Network embedding in biomedical data science |
| 198 | -- | 210 | Fei Liu 0006, Monika Heiner, David R. Gilbert. Fuzzy Petri nets for modelling of uncertain biological systems |
| 211 | -- | 220 | ZiaurRehman Tanoli, Zaid Alam, Aleksandr Ianevski, Krister Wennerberg, Markus Vähä-Koskela, Tero Aittokallio. Interactive visual analysis of drug-target interaction networks using Drug Target Profiler, with applications to precision medicine and drug repurposing |
| 248 | -- | 261 | Jifan Shi, Andrew E. Teschendorff, Weiyan Chen, Luonan Chen, Tiejun Li. Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures |
| 262 | -- | 271 | Michiel Stock, Tapio Pahikkala, Antti Airola, Willem Waegeman, Bernard De Baets. Algebraic shortcuts for leave-one-out cross-validation in supervised network inference |
| 272 | -- | 281 | Adriana Pitea, Ivan Kondofersky, Steffen Sass, Fabian J. Theis, Nikola S. Müller, Kristian Unger. Copy number aberrations from Affymetrix SNP 6.0 genotyping data - how accurate are commonly used prediction approaches? |
| 282 | -- | 297 | Chao Shen, Zhe Wang, Xiaojun Yao, Youyong Li, Tailong Lei, Ercheng Wang, Lei Xu, Feng Zhu 0004, Dan Li, Tingjun Hou. Comprehensive assessment of nine docking programs on type II kinase inhibitors: prediction accuracy of sampling power, scoring power and screening power |
| 298 | -- | 308 | Bin Liu 0014, Shuangyan Jiang, Quan Zou 0001. HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search |
| 309 | -- | 317 | Zhenyu Yue, Le Zhao, Junfeng Xia. dbCPM: a manually curated database for exploring the cancer passenger mutations |
| 318 | -- | 328 | Feng-Xu Wu, Fan Wang, Jing-Fang Yang, Wen Jiang, Meng-Yao Wang, Chen-Yang Jia, Ge-Fei Hao, Guangfu Yang. AIMMS suite: a web server dedicated for prediction of drug resistance on protein mutation |
| 329 | -- | 337 | Dan Yao, Hainan Wu, Yuhua Chen, Wenguo Yang, Hua Gao, Chunfa Tong. gmRAD: an integrated SNP calling pipeline for genetic mapping with RADseq across a hybrid population |
| 338 | -- | 347 | Quanhu Sheng, David C. Samuels, Hui Yu, Scott Ness, Ying-Yong Zhao, Yan Guo. Cancer-specific expression quantitative loci are affected by expression dysregulation |
| 348 | -- | 354 | Sameer Salunkhe, Naren Chandran, Pratik Chandrani, Amit Dutt, Shilpee Dutt. CytoPred: 7-gene pair metric for AML cytogenetic risk prediction |
| 355 | -- | 367 | Eugenio Del Prete, Angelo M. Facchiano, Pietro Liò. Bioinformatics methodologies for coeliac disease and its comorbidities |