Journal: Briefings in Bioinformatics

Volume 21, Issue 3

753 -- 761Regina Brinster, Dominique Scherer, Justo Lorenzo Bermejo. Optimal selection of genetic variants for adjustment of population stratification in European association studies
762 -- 776Yu Ding, Hong Wang, Hewei Zheng, Lianzong Wang, Guosi Zhang, Jiaxin Yang, Xiaoyan Lu, Yu Bai, Haotian Zhang, Jing Li, Wenyan Gao, Fukun Chen, Shui Hu, Jingqi Wu, Liangde Xu. Evaluation of drug efficacy based on the spatial position comparison of drug-target interaction centers
777 -- 790Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences
791 -- 802Neann Mathai, Ya Chen, Johannes Kirchmair. Validation strategies for target prediction methods
803 -- 814Fabio Fabris, Daniel Palmer, João Pedro de Magalhães, Alex Alves Freitas. Comparing enrichment analysis and machine learning for identifying gene properties that discriminate between gene classes
815 -- 835Zhongjie Liang, Gennady M. Verkhivker, Guang Hu. Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications
836 -- 850Edwin Yu-Kiu Ho, Qin Cao, Meng-Ting Gu, Ricky Wai-Lun Chan, Qiong Wu, Mark Gerstein, Kevin Y. Yip. Shaping the nebulous enhancer in the era of high-throughput assays and genome editing
851 -- 862Charalampos Papachristou, Swati Biswas. Comparison of haplotype-based tests for detecting gene-environment interactions with rare variants
863 -- 875Jianjian Wang, Yuze Cao, Xiaoyu Lu, Tianfeng Wang, Shuang Li, Xiaotong Kong, Chunrui Bo, Jie Li, Xiaolong Wang, Heping Ma, Lei Li, Huixue Zhang, Shangwei Ning, Lihua Wang. MicroRNAs and nervous system diseases: network insights and computational challenges
876 -- 884Ansuman Chattopadhyay, Carrie L. Iwema, Barbara A Epstein, Adrian V. Lee, Arthur S. Levine. Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers
885 -- 905Saman Zeeshan, Ruoyun Xiong, Bruce T. Liang, Zeeshan Ahmed. 100 Years of evolving gene-disease complexities and scientific debutants
906 -- 918Jimmy Omony, Thomas Nussbaumer, Ruben Gutzat. DNA methylation analysis in plants: review of computational tools and future perspectives
919 -- 935Mengying Sun, Sendong Zhao, Coryandar Gilvary, Olivier Elemento, Jiayu Zhou, Fei Wang. Graph convolutional networks for computational drug development and discovery
936 -- 945Charles Vesteghem, Rasmus Froberg Brøndum, Mads Sønderkær, Mia Sommer, Alexander Schmitz, Julie Støve Bødker, Karen Dybkær, Tarec Christoffer El-Galaly, Martin Bøgsted. Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives
946 -- 956Zijie Shen, Yuan Lin, Quan Zou 0001. Transcription factors-DNA interactions in rice: identification and verification
957 -- 969Feng Li, Tan Wu, Yanjun Xu, Qun Dong, Jing Xiao, Yingqi Xu, Qian Li, Chunlong Zhang, Jianxia Gao, Liqiu Liu, Xiaoxu Hu, Jian Huang, Xia Li, Yunpeng Zhang. A comprehensive overview of oncogenic pathways in human cancer
970 -- 981Na Cheng, Menglu Li, Le Zhao, Bo Zhang, Yuhua Yang, Chun-Hou Zheng, Junfeng Xia. Comparison and integration of computational methods for deleterious synonymous mutation prediction
982 -- 995Hao Lv, Zi-Mei Zhang, Shi-Hao Li, Jiu-Xin Tan, Wei Chen, Hao Lin. Evaluation of different computational methods on 5-methylcytosine sites identification
996 -- 1005Ran Su, Xinyi Liu, Guobao Xiao, Leyi Wei. Meta-GDBP: a high-level stacked regression model to improve anticancer drug response prediction
1006 -- 1015Yadong Yang, Tao Zhang, Rudan Xiao, Xiaopeng Hao, Huiqiang Zhang, Hongzhu Qu, Bingbing Xie, Tao Wang, Xiangdong Fang. Platform-independent approach for cancer detection from gene expression profiles of peripheral blood cells
1016 -- 1022Shiqiang Cheng, Bei Han, Miao Ding, Yan Wen, Mei Ma, Lu Zhang, Xin Qi, Bolun Cheng, Ping Li, Om Prakash Kafle, Xiao Liang, Li Liu, Yanan Du, Yan Zhao, Feng Zhang. Identifying psychiatric disorder-associated gut microbiota using microbiota-related gene set enrichment analysis
1023 -- 1037Zhijie Han 0003, Weiwei Xue, Lin Tao, Yan Lou, Yunqing Qiu, Feng Zhu 0004. Genome-wide identification and analysis of the eQTL lncRNAs in multiple sclerosis based on RNA-seq data
1038 -- 1046Sijia Zhang, Le Zhao, Chun-Hou Zheng, Junfeng Xia. A feature-based approach to predict hot spots in protein-DNA binding interfaces
1047 -- 1057Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song. iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
1058 -- 1068Qingxia Yang, Bo Li, Jing Tang, Xuejiao Cui, Yunxia Wang, Xiaofeng Li, Jie Hu, Yuzong Chen, Weiwei Xue, Yan Lou, Yunqing Qiu, Feng Zhu 0004. Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data
1069 -- 1079Fuyi Li, Cunshuo Fan, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Cangzhi Jia, Yan Zhu, Alexander Ian Smith, Geoffrey I. Webb, Quanzhong Liu, Leyi Wei, Jian Li, Jiangning Song. PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact
1080 -- 1097Ji Zhang, Meige Guan, Qianliang Wang, Jiajun Zhang, Tianshou Zhou, Xiaoqiang Sun. Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas
1098 -- 1114Chia-Ru Chung, Ting-Rung Kuo, Li-Ching Wu, Tzong-Yi Lee, Jorng-Tzong Horng. Characterization and identification of antimicrobial peptides with different functional activities
1115 -- 1117Meik Kunz, Julian Jeromin, Maximilian Fuchs, Jan Christoph, Giulia Veronesi, Michael Flentje, Sarah Nietzer, Gudrun Dandekar, Thomas Dandekar. In silico signaling modeling to understand cancer pathways and treatment responses
1118 -- 0. Corrigendum to: Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data