Journal: Bioinformatics

Volume 19, Issue 4

443 -- 448Michael D. Stern, Sergey V. Anisimov, Kenneth R. Boheler. Can transcriptome size be estimated from SAGE catalogs?
449 -- 458Jyotsna Kasturi, Raj Acharya, Murali Ramanathan. An information theoretic approach for analyzing temporal patterns of gene expression
459 -- 466Susmita Datta, Somnath Datta. Comparisons and validation of statistical clustering techniques for microarray gene expression data
467 -- 473Daniel Johansson, Petter Lindgren, Anders Berglund. A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription
474 -- 482Yihui Luan, Hongzhe Li. Clustering of time-course gene expression data using a mixed-effects model with B-splines
483 -- 489Lee Makowski, Alexei Soares. Estimating the diversity of peptide populations from limited sequence data
490 -- 499Dirk Metzler. Statistical alignment based on fragment insertion and deletion models
500 -- 505Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio. MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments
506 -- 512Mounir Errami, Christophe Geourjon, Gilbert Deléage. Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures
513 -- 523Susana Vinga, Jonas S. Almeida. Alignment-free sequence comparison-a review
524 -- 531Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
524 -- 531Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
532 -- 538Petter Holme, Mikael Huss, Hawoong Jeong. Subnetwork hierarchies of biochemical pathways
541 -- 542Steven P. Bennett, Craig G. Nevill-Manning, Douglas L. Brutlag. 3MOTIF: visualizing conserved protein sequence motifs in the protein structure database
543 -- 543Endre Barta, László Kaján, Sándor Pongor. IS: a web-site for intron statistics
544 -- 545Jason M. Johnson, Keith Mason, Ciamac Cyrus Moallemi, Hualin Xi, Shyamal Somaroo, Enoch S. Huang. Protein family annotation in a multiple alignment viewer
546 -- 547Rodrigo Lopez, Stephen Robinson, Asif Kibria, Nicola Harte, Gulam Patel, Rob Harper, Emmanuel Quevillon, Ville Silventoinen, Kimmo Kallio, Petteri Jokinen. The European Bioinformatics Institute web site: a new view