| 1 | -- | 1 | Alfonso Valencia, Alex Bateman. Increasing the Impact of ::::Bioinformatics:::: |
| 2 | -- | 9 | Albert D. G. de Roos. Origins of introns based on the definition of exon modules and their conserved interfaces |
| 10 | -- | 19 | Kuo-Chen Chou. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes |
| 20 | -- | 30 | Chin Lung Lu, Yen Pin Huang. A memory-efficient algorithm for multiple sequence alignment with constraints |
| 31 | -- | 38 | Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith, Theresa Zhang, Michael Q. Zhang. DWE: Discriminating Word Enumerator |
| 39 | -- | 50 | Åsa K. Björklund, Daniel Soeria-Atmadja, Anna Zorzet, Ulf Hammerling, Mats G. Gustafsson. Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins |
| 51 | -- | 62 | Luonan Chen, Tianshou Zhou, Yun Tang. Protein structure alignment by deterministic annealing |
| 63 | -- | 70 | Wenjiang J. Fu, Edward R. Dougherty, Bani K. Mallick, Raymond J. Carroll. How many samples are needed to build a classifier: a general sequential approach |
| 71 | -- | 79 | Min Zou, Suzanne D. Conzen. A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data |
| 80 | -- | 89 | Toni Reverter-Gomez, S. M. McWilliam, Wes Barris, Brian P. Dalrymple. A rapid method for computationally inferring transcriptome coverage and microarray sensitivity |
| 90 | -- | 103 | Kui Zhang, Fengzhu Sun, Hongyu Zhao. HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination |
| 104 | -- | 115 | Ramin Homayouni, Kevin Heinrich, Lai Wei, Michael W. Berry. Gene clustering by Latent Semantic Indexing of MEDLINE abstracts |
| 116 | -- | 121 | Yongqun He, Richard R. Vines, Alice R. Wattam, Georgiy V. Abramochkin, Allan Dickerman, J. Dana Eckart, Bruno W. S. Sobral. PIML: the Pathogen Information Markup Language |
| 122 | -- | 123 | Robert Belshaw, Aris Katzourakis. ::::BlastAlign::::: a program that uses ::::blast:::: to align problematic nucleotide sequences |
| 124 | -- | 127 | Scott J. Tebbutt, Igor V. Opushnyev, Ben W. Tripp, Ayaz M. Kassamali, Wendy L. Alexander, Marilyn I. Andersen. SNP Chart: an integrated platform for visualization and interpretation of microarray genotyping data |
| 128 | -- | 130 | Marie-Françoise Jourjon, Sylvain Jasson, Jacques Marcel, Baba Ngom, Brigitte Mangin. MCQTL: multi-allelic QTL mapping in multi-cross design |
| 131 | -- | 134 | Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun. HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms |
| 135 | -- | 136 | Vincent Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman. Network structures and algorithms in Bioconductor |
| 137 | -- | 140 | Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M. Iakoucheva, Marc S. Cortese, J. David Lawson, Celeste J. Brown, Jason G. Sikes, Crystal D. Newton, A. Keith Dunker. DisProt: a database of protein disorder |