Robert Gentleman - researchr alias

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Viewing Publication 1 - 37 from 37

2025

Enhancing statistical analysis of real world dataLaha Ale, Robert Gentleman, Christopher Endres, Sam Pullman, Nathan Palmer, Rafael S. Gonçalves 0001, Deepayan Sarkar. biodb, 2025, 2025. [doi]

2024

The text2term tool to map free-text descriptions of biomedical terms to ontologiesRafael S. Gonçalves 0001, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman. biodb, 2024, January 2024. [doi]

nhanesA: achieving transparency and reproducibility in NHANES researchLaha Ale, Robert Gentleman, Teresa Filshtein Sonmez, Deepayan Sarkar, Christopher Endres. biodb, 2024, January 2024. [doi]

2023

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactionsLudwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman. bioinformatics, 39(3), March 2023. [doi]

2017

VariantTools: an extensible framework for developing and testing variant callersMichael F. Lawrence, Robert Gentleman. bioinformatics, 33(20):3311-3313, 2017. [doi]

2014

2013

Software for Computing and Annotating Genomic RangesMichael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey. ploscb, 9(8), 2013. [doi]

2011

Workshop IntroductionMichael Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman. psb 2011: 364-368 [doi]

2009

Knowledge based identification of essential signaling from genome-scale siRNA experimentsArmand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl. bmcsb, 3:80, 2009. [doi]

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.xVincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby. bioinformatics, 25(11):1447-1448, 2009. [doi]

Interpreting Genetics Of Gene Expression: Integrative Architecture In BioconductorVincent J. Carey, Robert Gentleman. psb 2009: 380-390 [doi]

flowCore: a Bioconductor package for high throughput flow cytometryFlorian Hahne, Nolwenn LeMeur, Ryan R. Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman. bmcbi, 10, 2009. [doi]

arrayQualityMetrics - a bioconductor package for quality assessment of microarray dataAudrey Kauffmann, Robert Gentleman, Wolfgang Huber. bioinformatics, 25(3):415-416, 2009. [doi]

DATABASE: A new forum for biological databases and curationDavid Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette. biodb, 2009, 2009. [doi]

rtracklayer: an R package for interfacing with genome browsersMichael F. Lawrence, Robert Gentleman, Vincent J. Carey. bioinformatics, 25(14):1841-1842, 2009. [doi]

iFlow: A Graphical User Interface for Flow Cytometry Tools in BioconductorKyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman. abi, 2009, 2009. [doi]

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence dataMartin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, HervÃ© PagÃ¨s, Robert Gentleman. bioinformatics, 25(19):2607-2608, 2009. [doi]

Minimal Covers of Maximal Cliques for Interval GraphsAlain C. Vandal, Marston D. E. Conder, Robert Gentleman. arscom, 92, 2009.

2008

2007

GGtools: analysis of genetics of gene expression in bioconductorVincent Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman. bioinformatics, 23(4):522-523, 2007. [doi]

Using GOstats to test gene lists for GO term associationSeth Falcon, Robert Gentleman. bioinformatics, 23(2):257-258, 2007. [doi]

Graphs in molecular biologyWolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman. bmcbi, 8(S-6), 2007. [doi]

Extensions to gene set enrichmentZhen Jiang, Robert Gentleman. bioinformatics, 23(3):306-313, 2007. [doi]

2005

Network structures and algorithms in BioconductorVincent Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman. bioinformatics, 21(1):135-136, 2005. [doi]

Local modeling of global interactome networksDenise Scholtens, Marc Vidal, Robert Gentleman. bioinformatics, 21(17):3548-3557, 2005. [doi]

2004

A graph-theoretic approach to testing associations between disparate sources of functional genomics dataRaji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman. bioinformatics, 20(18):3353-3362, 2004. [doi]

matchprobes: a Bioconductor package for the sequence-matching of microarray probe elementsWolfgang Huber, Robert Gentleman. bioinformatics, 20(10):1651-1652, 2004. [doi]

2003

An extensible application for assembling annotation for genomic dataJianhua Zhang, Vincent Carey, Robert Gentleman. bioinformatics, 19(1):155-156, 2003.

1996

Book reviewsNozer D. Singpurwalla, Robert Gentleman, Willem J. Heiser, Dibyen Majumdar. sac, 6(4):387-391, 1996. [doi]

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2025

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1996

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