| 2933 | -- | 2942 | K. Cartharius, Kornelie Frech, Korbinian Grote, B. Klocke, M. Haltmeier, Andreas Klingenhoff, Matthias Frisch, M. Bayerlein, Thomas Werner. MatInspector and beyond: promoter analysis based on transcription factor binding sites |
| 2943 | -- | 2949 | G. D Avenio, M. Grigioni, G. Orefici, R. Creti. SWIFT (sequence-wide investigation with Fourier transform): a software tool for identifying proteins of a given class from the unannotated genome sequence |
| 2950 | -- | 2956 | Milana Frenkel-Morgenstern, Hillary Voet, Shmuel Pietrokovski. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure |
| 2957 | -- | 2959 | Mark DeLong, Guang Yao, Quanli Wang, Adrian Dobra, Esther P. Black, Jeffrey T. Chang, Andrea Bild, Mike West, Joseph Nevins, Holly Dressman. DIG - a system for gene annotation and functional discovery |
| 2960 | -- | 2968 | Marco Punta, Burkhard Rost. PROFcon: novel prediction of long-range contacts |
| 2969 | -- | 2977 | Kai Wang, Ram Samudrala. FSSA: a novel method for identifying functional signatures from structural alignments |
| 2978 | -- | 2987 | Lee-Wei Yang, Xiong Liu, Christopher Jon Jursa, Mark Holliman, A. J. Rader, Hassan A. Karimi, Ivet Bahar. ::::i::::GNM: a database of protein functional motions based on Gaussian Network Model |
| 2988 | -- | 2993 | Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo. Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information |
| 2994 | -- | 3000 | Omer Demirkaya, Musa H. Asyali, Mohamed M. Shoukri. Segmentation of cDNA Microarray Spots Using Markov Random Field Modeling |
| 3001 | -- | 3008 | Jiang Gui, Hongzhe Li. Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data |
| 3009 | -- | 3016 | Yulan Liang, Bamidele Tayo, Xueya Cai, Arpad Kelemen. Differential and trajectory methods for time course gene expression data |
| 3017 | -- | 3024 | Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner. False discovery rate, sensitivity and sample size for microarray studies |
| 3025 | -- | 3033 | Andrew E. Teschendorff, Yanzhong Wang, Nuno L. Barbosa-Morais, James D. Brenton, Carlos H. Caldas. A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data |
| 3034 | -- | 3042 | Vladimir N. Minin, Karin S. Dorman, Fang Fang, Marc A. Suchard. Dual multiple change-point model leads to more accurate recombination detection |
| 3043 | -- | 3048 | Age K. Smilde, Jeroen J. Jansen, Huub C. J. Hoefsloot, Robert-Jan A. N. Lamers, Jan van der Greef, Marieke E. Timmerman. ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data |
| 3049 | -- | 3050 | Dequan Li, Yan Fu, Ruixiang Sun, Charles X. Ling, Yonggang Wei, Hu Zhou, Rong Zeng, Qiang Yang, Simin He, Wen Gao. pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry |
| 3051 | -- | 3052 | Grégory Nuel. S-SPatt: simple statistics for patterns on Markov chains |
| 3053 | -- | 3055 | M. W. J. van Passel, A. C. M. Luyf, Antoine H. C. van Kampen, A. Bart, A. van der Ende. delta rho-Web, an online tool to assess composition similarity of individual nucleic acid sequences |
| 3056 | -- | 3057 | Jeng-Sheng Yeh, Ding-Yun Chen, Bing-Yu Chen, Ming Ouhyoung. A web-based three-dimensional protein retrieval system by matching visual similarity |
| 3058 | -- | 3059 | Ian John Donaldson, Michael Chapman, Berthold Göttgens. TFBScluster: a resource for the characterization of transcriptional regulatory networks |
| 3060 | -- | 3061 | Emily L. Webb, Gabrielle S. Sellick, Richard S. Houlston. SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal |