| 2973 | -- | 2974 | Trey Ideker, Alfonso Valencia. Bioinformatics in the human interactome project |
| 2975 | -- | 2979 | Koen Deforche, T. Silander, Ricardo Camacho, Z. Grossman, M. A. Soares, Kristel Van Laethem, R. Kantor, Yves Moreau, Anne-Mieke Vandamme. Analysis of HIV-1 ::::pol:::: sequences using Bayesian Networks: implications for drug resistance |
| 2980 | -- | 2987 | Xuehui Li, Tamer Kahveci. A Novel algorithm for identifying low-complexity regions in a protein sequence |
| 2988 | -- | 2995 | Stinus Lindgreen, Paul P. Gardner, Anders Krogh. Measuring covariation in RNA alignments: physical realism improves information measures |
| 2996 | -- | 3002 | Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas. MUSA: a parameter free algorithm for the identification of biologically significant motifs |
| 3003 | -- | 3008 | Mireia Vilardell, Alex Sánchez-Pla. Hypothesis testing approaches to the exon prediction problem |
| 3009 | -- | 3015 | Olav Zimmermann, Ulrich H. E. Hansmann. Support vector machines for prediction of dihedral angle regions |
| 3016 | -- | 3024 | Jiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein. A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge |
| 3025 | -- | 3031 | Yudi Pawitan, Stefano Calza, Alexander Ploner. Estimation of false discovery proportion under general dependence |
| 3032 | -- | 3039 | Cathal Seoighe, Victoria Nembaware, Konrad Scheffler. Maximum likelihood inference of imprinting and allele-specific expression from EST data |
| 3040 | -- | 3046 | Mark P. Brynildsen, Linh M. Tran, James C. Liao. A Gibbs sampler for the identification of gene expression and network connectivity consistency |
| 3047 | -- | 3053 | János Z. Kelemen, Attila Kertész-Farkas, András Kocsor, László G. Puskás. Kalman filtering for disease-state estimation from microarray data |
| 3054 | -- | 3060 | Daniel S. Yuan, Rafael A. Irizarry. High-resolution spatial normalization for microarrays containing embedded technical replicates |
| 3061 | -- | 3066 | Paul Fearnhead. SequenceLDhot: detecting recombination hotspots |
| 3067 | -- | 3074 | Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer. COPASI - a COmplex PAthway SImulator |
| 3075 | -- | 3081 | Claudio Eccher, Corrado Priami. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus |
| 3082 | -- | 3088 | Fangping Mu, Pat J. Unkefer, Clifford J. Unkefer, William S. Hlavacek. Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites |
| 3089 | -- | 3095 | Naoaki Okazaki, Sophia Ananiadou. Building an abbreviation dictionary using a term recognition approach |
| 3096 | -- | 3098 | Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost. GARD: a genetic algorithm for recombination detection |
| 3099 | -- | 3100 | Jan Mrázek, Shaohua Xie. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences |
| 3101 | -- | 3102 | G. Andrew Woolley, En-shiun Lee, Fuzhong Zhang. sGAL: a computational method for finding surface exposed sites in proteins suitable for Cys-mediated cross-linking |
| 3103 | -- | 3105 | Thomas Hoffmann, Christoph Lange. P:::2:::BAT: a massive parallel implementation of PBAT for genome-wide association studies in R |
| 3106 | -- | 3108 | Jeongah Yoon, Anselm Blumer, Kyongbum Lee. An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality |