Sven Sahle - researchr alias

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Viewing Publication 1 - 22 from 22

2022

Stochastic dynamics of Type-I interferon responsesBenjamin D. Maier, Luis U. Aguilera, Sven Sahle, Pascal Mutz, Priyata Kalra, Christopher Dächert, Ralf Bartenschlager, Marco Binder, Ursula Kummer. ploscb, 18(10):1010623, October 2022. [doi]

2021

2019

2018

SBML Level 3 package: Render, Version 1, Release 1Frank T. Bergmann, Sarah M. Keating, Ralph Gauges, Sven Sahle, Katja Wengler. jib, 15(1), 2018. [doi]

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

2016

Piecewise parameter estimation for stochastic models in COPASIFrank T. Bergmann, Sven Sahle, Christoph Zimmer. bioinformatics, 32(10):1586-1588, 2016. [doi]

Comparison of approaches for parameter estimation on stochastic models: Generic least squares versus specialized approachesChristoph Zimmer, Sven Sahle. CANDC, 61:75-85, 2016. [doi]

2015

The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 CoreRalph Gauges, Ursula Rost, Sven Sahle, Katja Wengler, Frank Thomas Bergmann. jib, 12(2), 2015. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 CoreMichael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith, Darren J. Wilkinson. jib, 12(2), 2015. [doi]

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model DefinitionsMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 12(2), 2015. [doi]

A termination criterion for parameter estimation in stochastic models in systems biologyChristoph Zimmer, Sven Sahle. biosystems, 137:55-63, 2015. [doi]

2012

Simplification of biochemical models: a general approach based on the analysis of the impact of individual species and reactions on the systems dynamicsIrina Surovtsova, Natalia Simus, Katrin Hübner, Sven Sahle, Ursula Kummer. bmcsb, 6:14, 2012. [doi]

2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup LanguageDagmar Waltemath, Richard Adams, Frank T. Bergmann, Michael Hucka, Fedor Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère. bmcsb, 5:198, 2011. [doi]

2009

Accessible methods for the dynamic time-scale decomposition of biochemical systemsIrina Surovtsova, Natalia Simus, Thomas Lorenz, Artjom KÃ¶nig, Sven Sahle, Ursula Kummer. bioinformatics, 25(21):2816-2823, 2009. [doi]

2008

SYCAMORE - a systems biology computational analysis and modeling research environmentAndreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer. bioinformatics, 24(12):1463-1464, 2008. [doi]

2006

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