Sarah M. Keating - researchr alias

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2023

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022Matthias König 0003, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer 0001, Dagmar Waltemath, Falk Schreiber. jib, 20(1), March 2023. [doi]

2022

barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biologyAnna Niarakis, Dagmar Waltemath, James Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone. bib, 23(4), 2022. [doi]

2021

Specifications of standards in systems and synthetic biology: status and developments in 2021Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König 0003, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath. jib, 18(3), 2021. [doi]

2020

Specifications of standards in systems and synthetic biology: status and developments in 2020Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath. jib, 17(2-3), 2020. [doi]

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka. jib, 17(2-3), 2020. [doi]

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim. jib, 17(2-3), 2020. [doi]

2019

2018

SBML Level 3 package: Render, Version 1, Release 1Frank T. Bergmann, Sarah M. Keating, Ralph Gauges, Sven Sahle, Katja Wengler. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath. jib, 15(1), 2018. [doi]

2016

MOCCASIN: converting MATLAB ODE models to SBMLHarold F. Gómez, Michael Hucka, Sarah M. Keating, German Nudelman, Dagmar Iber, Stuart C. Sealfon. bioinformatics, 32(12):1905-1906, 2016. [doi]

2015

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar. jib, 12(2), 2015. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 CoreMichael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith, Darren J. Wilkinson. jib, 12(2), 2015. [doi]

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model DefinitionsMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 12(2), 2015. [doi]

2013

2011

A Profile of Today's SBML-Compatible SoftwareMichael Hucka, Frank T. Bergmann, Sarah M. Keating, Lucian P. Smith. eScience 2011: 143-150 [doi]

2008

LibSBML: an API Library for SBMLBenjamin J. Bornstein, Sarah M. Keating, Akiya Jouraku, Michael Hucka. bioinformatics, 24(6):880-881, 2008. [doi]

2006

SBMLToolbox: an SBML toolbox for MATLAB usersSarah M. Keating, Benjamin J. Bornstein, Andrew Finney, Michael Hucka. bioinformatics, 22(10):1275-1277, 2006. [doi]

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