Douglas B. Kell - researchr alias

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Viewing Publication 1 - 57 from 57

2020

DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approachYash Khemchandani, Stephen O'Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala, Douglas B. Kell. jcheminf, 12(1):53, 2020. [doi]

2018

2017

2015

Software review: the KNIME workflow environment and its applications in genetic programming and machine learningSteve O'Hagan, Douglas B. Kell. gpem, 16(3):387-391, 2015. [doi]

2014

GeneGenie: optimized oligomer design for directed evolutionNeil Swainston, Andrew Currin, Philip J. Day, Douglas B. Kell. nar, 42(Webserver-Issue):395-400, 2014. [doi]

2013

2012

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasetsMarie Brown, David C. Wedge, Royston Goodacre, Douglas B. Kell, Philip N. Baker, Louise C. Kenny, Mamas A. Mamas, Ludwig Neyses, Warwick B. Dunn. bioinformatics, 28(1):149, 2012. [doi]

Improving metabolic flux predictions using absolute gene expression dataDave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston. bmcsb, 6:73, 2012. [doi]

Extracting semantically enriched events from biomedical literatureMakoto Miwa, Paul Thompson, John McNaught, Douglas B. Kell, Sophia Ananiadou. bmcbi, 13:108, 2012. [doi]

The genetic control of growth rate: a systems biology study in yeastPinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver. bmcsb, 6:4, 2012. [doi]

2011

Predicting the points of interaction of small molecules in the NF-κB pathwayYogendra Patel, Catherine A. Heyward, Michael R. H. White, Douglas B. Kell. bmcsb, 5:32, 2011. [doi]

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networksNeil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton. jib, 8(2), 2011. [doi]

Interactions among oscillatory pathways in NF-kappa B signalingYunjiao Wang, Pawel Paszek, Caroline A. Horton, Douglas B. Kell, Michael R. H. White, David S. Broomhead, Mark R. Muldoon. bmcsb, 5:23, 2011. [doi]

2010

Utopia documents: linking scholarly literature with research dataTerri K. Attwood, Douglas B. Kell, Philip McDermott, James Marsh, Stephen Pettifer, David Thorne. bioinformatics, 26(18), 2010. [doi]

Predictive models for population performance on real biological fitness landscapesWilliam Rowe, David C. Wedge, Mark Platt, Douglas B. Kell, Joshua D. Knowles. bioinformatics, 26(17):2145-2152, 2010. [doi]

Arcadia: a visualization tool for metabolic pathwaysAlice Villéger, Stephen Pettifer, Douglas B. Kell. bioinformatics, 26(11):1470-1471, 2010. [doi]

2009

Information management for high content live cell imagingDaniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton. bmcbi, 10, 2009. [doi]

Visualising biological data: a semantic approach to tool and database integrationSteve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice VillÃ©ger, Douglas B. Kell, Teresa K. Attwood. bmcbi, 10(S-6), 2009. [doi]

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathwaysIrena Spasic, Evangelos Simeonidis, Hanan L. Messiha, Norman W. Paton, Douglas B. Kell. bioinformatics, 25(11):1404-1411, 2009. [doi]

Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiaeThomas Williamson, Jean-Marc Schwartz, Douglas B. Kell, Lubomira Stateva. bmcsb, 3:70, 2009. [doi]

2008

Molecular Structure Elucidation Using Ant Colony Optimization: A Preliminary StudyCaroline Farrelly, Douglas B. Kell, Joshua D. Knowles. antsw 2008: 120-131 [doi]

Defrosting the Digital Library: Bibliographic Tools for the Next Generation WebDuncan Hull, Steve R. Pettifer, Douglas B. Kell. PLoS Comput Biol, 4(10), 10 2008. [doi]

Defrosting the Digital Library: Bibliographic Tools for the Next Generation WebDuncan Hull, Steve Pettifer, Douglas B. Kell. ploscb, 4(10), 2008. [doi]

Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte CarloBayu Jayawardhana, Douglas B. Kell, Magnus Rattray. bioinformatics, 24(9):1191-1197, 2008. [doi]

Automated manipulation of systems biology models using libSBML within Taverna workflowsPeter Li, Tom Oinn, Stian Soiland, Douglas B. Kell. bioinformatics, 24(2):287-289, 2008. [doi]

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray dataPeter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell. bmcbi, 9, 2008. [doi]

Facilitating the development of controlled vocabularies for metabolomics technologies with text miningIrena Spasic, Daniel Schober, Susanna-Assunta Sansone, Dietrich Rebholz-Schuhmann, Douglas B. Kell, Norman W. Paton. bmcbi, 9(S-5), 2008. [doi]

Rapid prediction of optimum population size in genetic programming using a novel genotype -: fitness correlationDavid C. Wedge, Douglas B. Kell. gecco 2008: 1315-1322 [doi]

The landscape adaptive particle swarm optimizerJin Yisu, Joshua D. Knowles, Hongmei Lu, Yizeng Liang, Douglas B. Kell. asc, 8(1):295-304, 2008. [doi]

2007

Multiobjective Optimization in Bioinformatics and Computational BiologyJulia Handl, Douglas B. Kell, Joshua D. Knowles. tcbb, 4(2):279-292, 2007. [doi]

Improving Data Fitting of a Signal Transduction Model by Global Sensitivity AnalysisYisu Jin, Hong Yue, Martin Brown, Yizeng Liang, Douglas B. Kell. amcc 2007: 2708-2713 [doi]

myGrid: Aligning a Workflow System with the Life Sciences CommunityTom Oinn, Peter Li, Douglas B. Kell, Carole A. Goble, Antoon Goderis, R. Mark Greenwood, Duncan Hull, Robert Stevens 0001, Daniele Turi, Jun Zhao 0003. In Ian J. Taylor, Ewa Deelman, Dennis B. Gannon, Matthew S. Shields, editors, Workflows for e-Science, Scientific Workflows for Grids. pages 300-319, Springer, 2007. [doi]

Peptide detectability following ESI mass spectrometry: prediction using genetic programmingDavid C. Wedge, Simon J. Gaskell, Simon J. Hubbard, Douglas B. Kell, King Wai Lau, Claire Eyers. gecco 2007: 2219-2225 [doi]

Towards a mathematical model of the cAMP pathway in S. cerevisiaeThomas Williamson, Frank Bruggemann, Douglas B. Kell, Lubomira Stateva. bmcsb, 1(S-1), 2007. [doi]

2006

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomicsIrena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell. bmcbi, 7:281, 2006. [doi]

2005

maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and disseminationDavid Hancock, Michael Wilson, Giles Velarde, Norman Morrison, Andrew Hayes, Helen Hulme, A. Joseph Wood, Karim Nashar, Douglas B. Kell, Andy Brass. bmcbi, 6:264, 2005. [doi]

Computational cluster validation in post-genomic data analysisJulia Handl, Joshua D. Knowles, Douglas B. Kell. bioinformatics, 21(15):3201-3212, 2005. [doi]

2003

Landscape State Machines: Tools for Evolutionary Algorithm Performance Analyses and Landscape/Algorithm MappingDavid Corne, Martin J. Oates, Douglas B. Kell. evoW 2003: 187-198 [doi]

2002

On Fitness Distributions and Expected Fitness Gain of Mutation Rates in Parallel Evolutionary AlgorithmsDavid Corne, Martin J. Oates, Douglas B. Kell. ppsn 2002: 132-141 [doi]

Fitness Gains and Mutation Patterns: Deriving Mutation Rates by Exploiting Landscape DataDavid W. Corne, Martin J. Oates, Douglas B. Kell. foga 2003: 347-364

Observed dynamics of Large Scale Parallel Evolutionary Algorithms with Implications for protein EngineeringMartin J. Oates, David Corne, Douglas B. Kell. seal 2004: 208-229 [doi]

2001

Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of GenesChristopher H. Bryant, Stephen Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King. etai, 5(B):1-36, 2001. [doi]

Compression of proteome gel images using complex wavelet transformWei Liu, Andy Woodward, Douglas B. Kell. gcb 2001: 207

MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systemsPedro Mendes, Douglas B. Kell. bioinformatics, 17(3):288-289, 2001.

Developing a Logical Model of Yeast MetabolismPhilip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen Muggleton, Christopher H. Bryant, Stephen G. Oliver. etai, 5(B):223-244, 2001. [doi]

Spectral analysis via supervised genetic search with application-specific mutationsJanet Taylor, Jem J. Rowland, Douglas B. Kell. cec 2001: 481-486 [doi]

2000

Genomic computing: explanatory modelling for functional genomicsRichard J. Gilbert, Jem J. Rowland, Douglas B. Kell. gecco 2000: 551-557

Explanatory Analysis of the Metabolome Using Genetic Programming of Simple, Interpretable RulesHelen E. Johnson, Richard J. Gilbert, Michael K. Winson, Royston Goodacre, Aileen R. Smith, Jem J. Rowland, Michael A. Hall, Douglas B. Kell. gpem, 1(3):243-258, 2000.

1998

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimationPedro Mendes, Douglas B. Kell. bioinformatics, 14(10):869-883, 1998.

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