Brett G. Olivier - researchr alias

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Viewing Publication 1 - 18 from 18

2022

BioSimulators: a central registry of simulation engines and services for recommending specific toolsBilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper 0004, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König 0003, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes 0001, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha 0002, Jacky Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr. nar, 50(W1):108-114, 2022. [doi]

2019

2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 CoreMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 15(1), 2018. [doi]

SBML Level 3 Package: Flux Balance Constraints version 2Brett G. Olivier, Frank T. Bergmann. jib, 15(1), 2018. [doi]

2016

2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model DefinitionsMichael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson. jib, 12(2), 2015. [doi]

Interplay between Constraints, Objectives, and Optimality for Genome-Scale Stoichiometric ModelsTimo R. Maarleveld, Meike T. Wortel, Brett G. Olivier, Bas Teusink, Frank J. Bruggeman. ploscb, 11(4), 2015. [doi]

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance ConstraintsBrett G. Olivier, Frank T. Bergmann. jib, 12(2), 2015. [doi]

Fast Flux Module Detection Using Matroid TheoryArne C. Reimers, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie. jcb, 22(5):414-424, 2015. [doi]

2014

2012

FAME, the Flux Analysis and Modeling EnvironmentJoost Boele, Brett G. Olivier, Bas Teusink. bmcsb, 6:8, 2012. [doi]

2005

Modelling cellular systems with PySCeSBrett G. Olivier, Johann M. Rohwer, Jan-Hendrik S. Hofmeyr. bioinformatics, 21(4):560-561, 2005. [doi]

2004

Web-based kinetic modelling using JWS OnlineBrett G. Olivier, Jacky L. Snoep. bioinformatics, 20(13):2143-2144, 2004. [doi]

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