Abstract is missing.
- Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype TractsDerek Aguiar, Eric M. Morrow, Sorin Istrail. 1-17 [doi]
- HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS DataEmily Berger, Deniz Yörükoglu, Jian Peng, Bonnie Berger. 18-19 [doi]
- Changepoint Analysis for Efficient Variant CallingAdam Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, David A. Patterson, Bin Yu, Yun S. Song. 20-34 [doi]
- On the Representation of de Bruijn GraphsRayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev. 35-55 [doi]
- Exact Learning of RNA Energy Parameters from StructureHamidreza Chitsaz, Mohammad Aminisharifabad. 56-68 [doi]
- An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq DataChen-Ping Fu, Vladimir Jojic, Leonard McMillan. 69-84 [doi]
- The Generating Function Approach for Peptide Identification in Spectral NetworksAdrian Guthals, Christina Boucher, Nuno Bandeira. 85-99 [doi]
- Decoding Coalescent Hidden Markov Models in Linear TimeKelley Harris, Sara Sheehan, John A. Kamm, Yun S. Song. 100-114 [doi]
- AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its ApplicationJan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka. 115-128 [doi]
- Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical ModelsHetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg. 129-143 [doi]
- On Sufficient Statistics of Least-Squares Superposition of Vector SetsArun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk. 144-159 [doi]
- IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein InformationHenry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin. 160-172 [doi]
- MRFalign: Protein Homology Detection through Alignment of Markov Random FieldsJianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu. 173-174 [doi]
- An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 BindingShaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni, Richard Sherwood, Akshay Kakumanu, Carolyn A. Morrison, Hynek Wichterle, David K. Gifford. 175-176 [doi]
- PASTA: Ultra-Large Multiple Sequence AlignmentSiavash Mirarab, Nam Nguyen, Tandy Warnow. 177-191 [doi]
- Fast Flux Module Detection Using Matroid TheoryArne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie. 192-206 [doi]
- Building a Pangenome Reference for a PopulationNgan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten. 207-221 [doi]
- CSAX: Characterizing Systematic Anomalies in eXpression DataKeith Noto, Carla E. Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim. 222-236 [doi]
- WhatsHap: Haplotype Assembly for Future-Generation Sequencing ReadsMurray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth. 237-249 [doi]
- Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation DataBenjamin J. Raphael, Fabio Vandin. 250-264 [doi]
- dipSPAdes: Assembler for Highly Polymorphic Diploid GenomesYana Safonova, Anton Bankevich, Pavel A. Pevzner. 265-279 [doi]
- An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate GenesMingfu Shao, Yu Lin, Bernard M. E. Moret. 280-292 [doi]
- HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting TimeRaunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin, Colin Collins, Gholamreza Haffari, Süleyman Cenk Sahinalp. 293-306 [doi]
- Modeling Mutual Exclusivity of Cancer MutationsEwa Szczurek, Niko Beerenwinkel. 307-308 [doi]
- Viral Quasispecies Assembly via Maximal Clique EnumerationArmin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel. 309-310 [doi]
- Correlated Protein Function Prediction via Maximization of Data-Knowledge ConsistencyHua Wang, Heng Huang, Chris H. Q. Ding. 311-325 [doi]
- Bayesian Multiple Protein Structure AlignmentRui Wang, Scott C. Schmidler. 326-339 [doi]
- Gene-Gene Interactions Detection Using a Two-Stage ModelZhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin. 340-355 [doi]
- A Geometric Clustering Algorithm and Its Applications to Structural DataShutan Xu, Shuxue Zou, Lincong Wang. 356-370 [doi]
- A Spatial-Aware Haplotype Copying Model with Applications to Genotype ImputationWen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc. 371-384 [doi]
- Traversing the k-mer Landscape of NGS Read Datasets for Quality Score SparsificationY. William Yu, Deniz Yörükoglu, Bonnie Berger. 385-399 [doi]
- Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy NumbersShay Zakov, Vineet Bafna. 400-417 [doi]
- Reconciliation with Non-binary Gene Trees RevisitedYu Zheng, Louxin Zhang. 418-432 [doi]
- Learning Protein-DNA Interaction Landscapes by Integrating Experimental Data through Computational ModelsJianling Zhong, Todd Wasson, Alexander J. Hartemink. 433-447 [doi]
- Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix CompletionMarinka Zitnik, Blaz Zupan. 448-462 [doi]