| 1225 | -- | 1228 | Roger Higdon, Gerald van Belle, Eugene Kolker. A note on the false discovery rate and inconsistent comparisons between experiments |
| 1229 | -- | 1235 | Niranjan Nagarajan, Timothy D. Read, Mihai Pop. Scaffolding and validation of bacterial genome assemblies using optical restriction maps |
| 1236 | -- | 1242 | Rahul Satija, Lior Pachter, Jotun Hein. Combining statistical alignment and phylogenetic footprinting to detect regulatory elements |
| 1243 | -- | 1250 | Ying Liu, Eran Eyal, Ivet Bahar. Analysis of correlated mutations in HIV-1 protease using spectral clustering |
| 1251 | -- | 1256 | Pawel Szczesny, Andrei N. Lupas. Domain annotation of trimeric autotransporter adhesins - daTAA |
| 1257 | -- | 1263 | Orland R. Gonzalez, Ralf Zimmer. Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes |
| 1264 | -- | 1270 | Theodoros Damoulas, Mark A. Girolami. Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection |
| 1271 | -- | 1277 | Yungki Park, Volkhard Helms. Prediction of the translocon-mediated membrane insertion free energies of protein sequences |
| 1278 | -- | 1285 | Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo. An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays |
| 1286 | -- | 1292 | Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho. Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data |
| 1293 | -- | 1299 | Zengyou He, Can Yang, Weichuan Yu. Peak bagging for peptide mass fingerprinting |
| 1300 | -- | 1304 | Tiziana Castrignanò, M. D Antonio, Anna Anselmo, Danilo Carrabino, A. D Onorio De Meo, Anna Maria D Erchia, Flavio Licciulli, M. Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole. ASPicDB: A database resource for alternative splicing analysis |
| 1305 | -- | 1306 | Istvan Albert, Shinichiro Wachi, Cizhong Jiang, B. Franklin Pugh. GeneTrack - a genomic data processing and visualization framework |
| 1307 | -- | 1309 | Richard J. Edwards, Norman E. Davey, Denis C. Shields. CompariMotif: quick and easy comparisons of sequence motifs |
| 1313 | -- | 1315 | Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio. FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps |
| 1316 | -- | 1317 | Alistair M. Chalk, Erik L. L. Sonnhammer. siRNA specificity searching incorporating mismatch tolerance data |
| 1318 | -- | 1320 | Sushmita Roy, Margaret Werner-Washburne, Terran Lane. A system for generating transcription regulatory networks with combinatorial control of transcription |
| 1321 | -- | 1322 | Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, Rolf Apweiler. UniProtJAPI: a remote API for accessing UniProt data |
| 1323 | -- | 0 | Qing Xiong, Yuhui Qiu, Weikuan Gu. PGMapper: a web-based tool linking phenotype to genes |