| 2277 | -- | 2280 | Antonina Andreeva, Henning Tidow. A novel CHHC Zn-finger domain found in spliceosomal proteins and tRNA modifying enzymes |
| 2281 | -- | 2287 | Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai. Fast and accurate search for non-coding RNA pseudoknot structures in genomes |
| 2288 | -- | 2295 | Edward Wijaya, Siu-Ming Yiu, Ngo Thanh Son, Kanagasabai Rajaraman, Wing-Kin Sung. MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders |
| 2296 | -- | 2302 | Qi Dai, Yanchun Yang, Tian-Ming Wang. Markov model plus ::::k::::-word distributions: a synergy that produces novel statistical measures for sequence comparison |
| 2303 | -- | 2307 | François Fauteux, Mathieu Blanchette, Martina V. Stromvik. Seeder: discriminative seeding DNA motif discovery |
| 2308 | -- | 2316 | K. C. Dukka Bahadur, Dennis R. Livesay. Improving position-specific predictions of protein functional sites using phylogenetic motifs |
| 2317 | -- | 2323 | Le Si Quang, Olivier Gascuel, Nicolas Lartillot. Empirical profile mixture models for phylogenetic reconstruction |
| 2324 | -- | 2328 | Vinay Pulim, Bonnie Berger, Jadwiga R. Bienkowska. Optimal contact map alignment of protein-protein interfaces |
| 2329 | -- | 2338 | Tuo Zhang, Hua Zhang, Ke Chen, Shiyi Shen, Jishou Ruan, Lukasz A. Kurgan. Accurate sequence-based prediction of catalytic residues |
| 2339 | -- | 2343 | Ryan M. Bannen, Vanitha Suresh, George N. Phillips Jr, Stephen J. Wright, Julie C. Mitchell. Optimal design of thermally stable proteins |
| 2344 | -- | 2349 | Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung. An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data |
| 2350 | -- | 2355 | Iuliana Ionita-Laza, Nan M. Laird, Benjamin A. Raby, Scott T. Weiss, Christoph Lange. On the frequency of copy number variants |
| 2356 | -- | 2362 | Meijuan Li, Cavan Reilly, Timothy Hanson. A semiparametric test to detect associations between quantitative traits and candidate genes in structured populations |
| 2363 | -- | 2369 | Jaroslaw Smieja, Mohammad Jamaluddin, Allan R. Brasier, Marek Kimmel. Model-based analysis of interferon-beta induced signaling pathway |
| 2370 | -- | 2375 | Juan Cui, Qi Liu, David Puett, Ying Xu. Computational prediction of human proteins that can be secreted into the bloodstream |
| 2376 | -- | 2383 | Shuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak. Local coherence in genetic interaction patterns reveals prevalent functional versatility |
| 2384 | -- | 2390 | Kristen A. Wieghaus, Erwin P. Gianchandani, Mikell A. Paige, Milton L. Brown, Edward A. Botchwey, Jason A. Papin. Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule |
| 2391 | -- | 2392 | Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer. Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores |
| 2393 | -- | 2394 | Anika Jöcker, Fabian Hoffmann, Andreas Groscurth, Heiko Schoof. Protein function prediction and annotation in an integrated environment powered by web services (AFAWE) |
| 2395 | -- | 2396 | Hui Jiang, Wing Hung Wong. SeqMap: mapping massive amount of oligonucleotides to the genome |
| 2397 | -- | 2398 | Yana Bromberg, Guy Yachdav, Burkhard Rost. SNAP predicts effect of mutations on protein function |
| 2399 | -- | 2400 | Thasso Griebel, Malte Brinkmeyer, Sebastian Böcker. EPoS: a modular software framework for phylogenetic analysis |
| 2401 | -- | 2402 | Matthias Wolf, Benjamin Ruderisch, Thomas Dandekar, Jörg Schultz, Tobias Müller. ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments |
| 2403 | -- | 2404 | Ádám Novák, István Miklós, Rune B. Lyngsø, Jotun Hein. StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees |
| 2405 | -- | 2406 | Wuming Gong, Yongliang Ren, Haiyan Zhou, Yejun Wang, Shuli Kang, Tongbin Li. ::::siDRM::::: an effective and generally applicable online siRNA design tool |
| 2407 | -- | 2408 | Jérôme Wojcik, Karl Forner. ExactFDR: exact computation of false discovery rate estimate in case-control association studies |
| 2409 | -- | 2411 | Jing Zhang, Tao Ma, Yanda Li, Shao Li. dbNEI2.0: building multilayer network for drug-NEI-disease |
| 2412 | -- | 2413 | SiYuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li. MPSQ: a web tool for protein-state searching |
| 2414 | -- | 2415 | Chaka Tang, Josephine F. Reyes, Fabio Luciani, Andrew R. Francis, Mark M. Tanaka. spolTools: online utilities for analyzing spoligotypes of the ::::Mycobacterium tuberculosis:::: complex |
| 2416 | -- | 2417 | Guangyong Zheng, Kang Tu, Qing Yang, Yun Xiong, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li. ITFP: an integrated platform of mammalian transcription factors |
| 2418 | -- | 2419 | Jason Persampieri, Deborah I. Ritter, Daniel Lees, Jessica Lehoczky, Qiang Li, Su Guo, Jeffrey H. Chuang. cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation |
| 2420 | -- | 0 | Yang Xie. Comments on On correcting the overestimation of the permutation-based false discovery rate estimator |
| 2421 | -- | 0 | Vladislav Vyshemirsky, Mark A. Girolami. Bayesian ranking of biochemical system models |