| 2571 | -- | 2578 | Christina Beargie, Tsunglin Liu, Mark Corriveau, Ha Youn Lee, Jonatha Gott, Ralf Bundschuh. Genome annotation in the presence of insertional RNA editing |
| 2579 | -- | 2585 | Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck. Phylogenetic distances are encoded in networks of interacting pathways |
| 2586 | -- | 2591 | Assaf P. Oron, Zhen Jiang, Robert Gentleman. Gene set enrichment analysis using linear models and diagnostics |
| 2592 | -- | 2601 | Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi. Bayesian learning of biological pathways on genomic data assimilation |
| 2602 | -- | 2607 | Katrin Sameith, Philipp Antczak, Elliot Marston, Nil Turan, Dieter Maier, Tanja Stankovic, Francesco Falciani. Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage |
| 2608 | -- | 2614 | Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost. Physical protein-protein interactions predicted from microarrays |
| 2615 | -- | 2621 | Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell. Can sugars be produced from fatty acids? A test case for pathway analysis tools |
| 2622 | -- | 2627 | Seesandra V. Rajagopala, Johannes Goll, N. D. Deve Gowda, Kumar C. Sunil, Björn Titz, Arnab Mukherjee, Sharmila S. Mary, Naresh Raviswaran, Chetan S. Poojari, Srinivas Ramachandra, Svetlana Shtivelband, Stephen M. Blazie, Julia Hofmann, Peter Uetz. MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions |
| 2628 | -- | 2629 | Craig E. Jones, Julian Schwerdt, Tessa Arwen Bretag, Ute Baumann, Alfred L. Brown. GOSLING: a rule-based protein annotator using BLAST and GO |
| 2630 | -- | 2631 | Martin Madera. Profile Comparer: a program for scoring and aligning profile hidden Markov models |
| 2632 | -- | 2633 | Francesco Sirocco, Silvio C. E. Tosatto. TESE: generating specific protein structure test set ensembles |
| 2634 | -- | 2635 | Shiyong Liu, Ying Gao, Ilya A. Vakser. DOCKGROUND protein-protein docking decoy set |
| 2636 | -- | 2638 | Edi Prifti, Jean-Daniel Zucker, Karine Clément, Corneliu Henegar. FunNet: an integrative tool for exploring transcriptional interactions |
| 2639 | -- | 2640 | Xin Zhou, Zhen Su. tCal: transcriptional probability calculator using thermodynamic model |
| 2641 | -- | 2642 | Daehee Hwang, Ning Zhang, Hookeun Lee, Eugene Yi, Hui Zhang, Inyoul Y. Lee, Leroy Hood, Ruedi Aebersold. MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis |
| 2643 | -- | 2644 | Ricardo Martínez, Nicolas Pasquier, Claude Pasquier. GenMiner: mining non-redundant association rules from integrated gene expression data and annotations |
| 2645 | -- | 2646 | Samone Khouangsathiene, Carlo Pearson, Summer Street, Betsy Ferguson, Christopher Dubay. MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms |
| 2647 | -- | 2649 | Khalid Belhajjame, Andrew R. Jones, Norman W. Paton. A toolkit for capturing and sharing FuGE experiments |
| 2650 | -- | 2656 | Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beißbarth. Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data |
| 2657 | -- | 2663 | Hakim Tafer, Ivo L. Hofacker. RNAplex: a fast tool for RNA-RNA interaction search |