Journal: Bioinformatics

Volume 24, Issue 17

1827 -- 1836Hanchuan Peng. Bioimage informatics: a new area of engineering biology
1837 -- 1842Gyan Prakash Srivastava, Juyuan Guo, Huidong Shi, Dong Xu. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands
1843 -- 1849Jie Wu, Douglas H. Sieglaff, Joshua Gervin, Xiaohui S. Xie. Discovering regulatory motifs in the ::::Plasmodium:::: genome using comparative genomics
1850 -- 1857Jiajian Liu, Gary D. Stormo. Context-dependent DNA recognition code for C::2::H::2:: zinc-finger transcription factors
1858 -- 1864James Lara, Robert M. Wohlhueter, Zoya Dimitrova, Yuri Khudyakov. Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein
1865 -- 1873David W. Ritchie, Dima Kozakov, Sandor Vajda. Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions
1874 -- 1880Huai Li, Ming Zhan. Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data
1881 -- 1888Shuiwang Ji, Liang Sun, Rong Jin, Sudhir Kumar, Jieping Ye. Automated annotation of ::::Drosophila:::: gene expression patterns using a controlled vocabulary
1889 -- 1895Blaise Hanczar, Edward R. Dougherty. Classification with reject option in gene expression data
1896 -- 1902Nils Homer, Waibhav Tembe, Szabolcs Szelinger, Margot Redman, Dietrich A. Stephan, John V. Pearson, Stanley F. Nelson, David Craig. Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies
1903 -- 1910M. A. Marchisio, Jörg Stelling. Computational design of synthetic gene circuits with composable parts
1911 -- 1916Heng Lian, William A. Thompson, Robert Thurman, John A. Stamatoyannopoulos, William Stafford Noble, Charles E. Lawrence. Automated mapping of large-scale chromatin structure in ENCODE
1917 -- 1925Abhishek Garg, Alessandro Di Cara, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli. Synchronous versus asynchronous modeling of gene regulatory networks
1926 -- 1932Yung-Keun Kwon, Kwang-Hyun Cho. Coherent coupling of feedback loops: a design principle of cell signaling networks
1933 -- 1934Vladislav Vyshemirsky, Mark Girolami. BioBayes: A software package for Bayesian inference in systems biology
1935 -- 1941Theodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis. PuReD-MCL: a graph-based PubMed document clustering methodology
1942 -- 1948Han Zhang, Hsin-Chou Yang, Yaning Yang. PoooL: an efficient method for estimating haplotype frequencies from large DNA pools
1949 -- 1950Art F. Y. Poon, Fraser I. Lewis, Simon D. W. Frost, Sergei L. Kosakovsky Pond. Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models
1951 -- 1952Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan. iFoldRNA: three-dimensional RNA structure prediction and folding
1953 -- 1954Paolo Marcatili, Alessandra Rosi, Anna Tramontano. PIGS: automatic prediction of antibody structures
1955 -- 1956Martin Prokop, Jan Adam, Zdenek Kríz, Michaela Wimmerová, Jaroslav Koca. TRITON: a graphical tool for ligand-binding protein engineering
1957 -- 1958Tae-Min Kim, Seon-Hee Yim, Yong-Bok Jeong, Yu-Chae Jung, Yeun-Jun Chung. PathCluster: a framework for gene set-based hierarchical clustering
1959 -- 1960Eoghan D. Harrington, Peer Bork. Sircah: a tool for the detection and visualization of alternative transcripts
1961 -- 1962Dominik Heider, Daniel Kessler, Angelika Barnekow. Watermarking sexually reproducing diploid organisms
1963 -- 1965Frank T. Bergmann, Herbert M. Sauro. Comparing simulation results of SBML capable simulators
1966 -- 1967Garrett M. Dancik, Karin S. Dorman. ::::mlegp::::: statistical analysis for computer models of biological systems using R
1968 -- 1970Songhua Xu, James McCusker, Michael Krauthammer. Yale Image Finder (YIF): a new search engine for retrieving biomedical images
1971 -- 1973Jung-Wei Fan, Carol Friedman. Semantic reclassification of the UMLS concepts