Olivier Collin - researchr alias

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Viewing Publication 1 - 21 from 21

2019

The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science communityThomas A. Darde, Estelle Lecluze, Aurélie Lardenois, Isabelle Stévant, Nathan Alary, Frank Tüttelmann, Olivier Collin, Serge Nef, Bernard Jégou, Antoine D. Rolland, Frédéric Chalmel. bioinformatics, 35(17):3133-3139, 2019. [doi]

2018

TOXsIgN: a cross-species repository for toxicogenomic signaturesThomas A. Darde, Pierre Gaudriault, Rémi Beranger, Clément Lancien, Annaëlle Caillarec-Joly, Olivier Sallou, Nathalie Bonvallot, Cécile Chevrier, Séverine Mazaud-Guittot, Bernard Jégou, Olivier Collin, Emmanuelle Becker, Antoine D. Rolland, Frédéric Chalmel. bioinformatics, 34(12):2116-2122, 2018. [doi]

2017

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunitiesSarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet. fgcs, 75:284-298, 2017. [doi]

2016

PepPSy: a web server to prioritize gene products in experimental and biocuration workflowsOlivier Sallou, Paula D. Duek, Thomas A. Darde, Olivier Collin, Lydie Lane, Frédéric Chalmel. biodb, 2016, 2016. [doi]

2015

Classification d'entités nommées de type filmOlivier Collin, Aleksandra Guerraz. taln 2015: 48-54 [doi]

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science communityThomas A. Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjeaud, Yvan Le Bras, Bernard Jégou, Olivier Collin, Antoine D. Rolland, Frédéric Chalmel. nar, 43(Webserver-Issue), 2015. [doi]

BioShaDock: a community driven bioinformatics shared Docker-based tools registryFrançois Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin. f1000research, 4:1443, 2015. [doi]

The BioMart community portal: an innovative alternative to large, centralized data repositoriesDamian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James E. Allen, Olivier Arnaiz, Mohammad Hamza Awedh, Richard A. Baldock, Giulia Barbiera, Philippe Bardou, Tim Beck, Andrew Blake 0003, Merideth Bonierbale, Anthony J. Brookes, Gabriele Bucci, Iwan Buetti, Sarah W. Burge, Cédric Cabau, Joseph W. Carlson, Claude Chelala, Charalambos Chrysostomou, Davide Cittaro, Olivier Collin, Raul Cordova, Rosalind J. Cutts, Erik Dassi, Alex Di Génova, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras, Julio Fernandez-Banet, Simon A. Forbes, Robert C. Free, Takatomo Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David M. Goodstein, Kristian A. Gray, José Afonso Guerra-Assunção, Bernard Haggarty, Dongjin Han, Byungwoo Han, Todd W. Harris, Jayson Harshbarger, Robert K. Hastings, Richard D. Hayes, Claire Hoede, Shen Hu, Zhi-Liang Hu, Lucie N. Hutchins, Zhengyan Kan, Hideya Kawaji, Aminah-Olivia Keliet, Arnaud Kerhornou, Sunghoon Kim, Rhoda Kinsella, Christophe Klopp, Lei Kong, Daniel Lawson, Dejan Lazarevic, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Liò, Chu-Jun Liu, Jie Luo, Alejandro Maass, Jérôme Mariette, Thomas Maurel, Stefania Merella, Azza Mostafa Mohamed, François Moreews, Nabihoudine Ibouniyamine, Nelson Ndegwa, Céline Noirot, Christian Perez-Llamas, Michael Primig, Alessandro Quattrone, Hadi Quesneville, Davide Rambaldi, James M. Reecy, Michela Riba, Steven Rosanoff, Amna Ali Saddiq, Elisa Salas, Olivier Sallou, Rebecca Shepherd, Reinhard Simon, Linda Sperling, William Spooner, Daniel M. Staines, Delphine Steinbach, Kevin R. Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa, Shi-Jian Zhang, Arek Kasprzyk. nar, 43(Webserver-Issue), 2015. [doi]

2013

CyanoLyase: a database of phycobilin lyase sequences, motifs and functionsAnthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky. nar, 41(Database-Issue):396-401, 2013. [doi]

2012

GPSy: a cross-species gene prioritization system for conserved biological processes - application in male gamete developmentRamona Britto, Olivier Sallou, Olivier Collin, Grégoire Michaux, Michael Primig, Frédéric Chalmel. nar, 40(Web-Server-Issue):458-465, 2012. [doi]

2011

Un outil de géolocalisation et de résumé automatique pour faciliter l accès à l information dans des corpus d actualitéEmilie Guimier De Neef, Aurélien Bossard, Frédéric Gavignet, Olivier Collin. f-egc 2011: 263-266

2010

2009

MIMAS 3.0 is a Multiomics Information Management and Annotation SystemAlexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig. bmcbi, 10, 2009. [doi]

2008

BioMAJ: a flexible framework for databanks synchronization and processingOlivier Filangi, Yoann Beausse, Anthony Assi, Ludovic Legrand, Jean-Marc Larré, Véronique Martin, Olivier Collin, Christophe Caron, Hugues Leroy, David Allouche. bioinformatics, 24(16):1823-1825, 2008. [doi]

2006

Acquisition de concepts bilingues à partir du WebOlivier Collin, Émmanuelle Pétrier. taln 2006: 112-120 [doi]

2003

Apprentissage Automatique de Paraphrases pour l'Amélioration d'un Système de Questions-RéponsesFlorence Duclaye, Olivier Collin, François Yvon. taln 2003: 115-124 [doi]

2002

Using the Web as a Linguistic Resource for Learning Reformulations AutomaticallyFlorence Duclaye, François Yvon, Olivier Collin. lrec 2002: [doi]

1999

Incremental enrolment of speech recognizersChafic Mokbel, Olivier Collin. icassp 1999: 453-456 [doi]

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