François Coste - researchr alias

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Viewing Publication 1 - 24 from 24

2023

Predicting enzymatic function of protein sequences with attentionNicolas Buton, François Coste, Yann Le Cunff. bioinformatics, 39(10), October 2023. [doi]

Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL familyOlivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret. ploscb, 19(8), 2023. [doi]

2021

PPalign: optimal alignment of Potts models representing proteins with direct coupling informationHugo Talibart, François Coste. bmcbi, 22(1):317, 2021. [doi]

2018

Learning local substitutable context-free languages from positive examples in polynomial time and data by reductionFrançois Coste, Jacques Nicolas. icgi 2019: 155-168 [doi]

How to measure the topological quality of protein parse trees?Mateusz Pyzik, François Coste, Witold Dyrka. icgi 2019: 118-138 [doi]

2016

VIRALpro: a tool to identify viral capsid and tail sequencesClovis Galiez, Christophe N. Magnan, François Coste, Pierre Baldi. bioinformatics, 32(9):1405-1407, 2016. [doi]

2015

Amplitude spectrum distance: measuring the global shape divergence of protein fragmentsClovis Galiez, François Coste. bmcbi, 16:256, 2015. [doi]

2014

A bottom-up efficient algorithm learning substitutable languages from positive examplesFrançois Coste, Gaëlle Garet, Jacques Nicolas. icgi 2014: 49-63 [doi]

Automated Enzyme Classification by Formal Concept AnalysisFrançois Coste, Gaëlle Garet, Agnès Groisillier, Jacques Nicolas, Thierry Tonon. icfca 2014: 235-250 [doi]

2013

CyanoLyase: a database of phycobilin lyase sequences, motifs and functionsAnthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky. nar, 41(Database-Issue):396-401, 2013. [doi]

2012

Searching for smallest grammars on large sequences and application to DNARafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López. jda, 11:62-72, 2012. [doi]

Locally Substitutable Languages for Enhanced Inductive LeapsFrançois Coste, Gaëlle Garet, Jacques Nicolas. jmlr, 21:97-111, 2012. [doi]

2011

The Smallest Grammar Problem as Constituents Choice and Minimal Grammar ParsingRafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López. algorithms, 4(4):262-284, 2011. [doi]

2010

Choosing Word Occurrences for the Smallest Grammar ProblemRafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López. LATA 2010: 154-165 [doi]

2008

In-place Update of Suffix Array while Recoding WordsMatthias Gallé, Pierre Peterlongo, François Coste. stringology 2008: 54-67 [doi]

2005

A Similar Fragments Merging Approach to Learn Automata on ProteinsFrançois Coste, Goulven Kerbellec. ecml 2005: 522-529 [doi]

Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning CompetitionBradford Starkie, François Coste, Menno van Zaanen. aicom, 18(2):93-115, 2005. [doi]

2004

Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent DFAJohn Abela, François Coste, Sandro Spina. icgi 2004: 28-39 [doi]

Introducing Domain and Typing Bias in Automata InferenceFrançois Coste, Daniel Fredouille, Christopher Kermorvant, Colin de la Higuera. icgi 2004: 115-126 [doi]

The Omphalos Context-Free Grammar Learning CompetitionBradford Starkie, François Coste, Menno van Zaanen. icgi 2004: 16-27 [doi]

2003

Unambiguous Automata Inference by Means of State-Merging MethodsFrançois Coste, Daniel Fredouille. ecml 2003: 60-71 [doi]

2000

Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic AutomataFrançois Coste, Daniel Fredouille. icgi 2000: 25-38

1998

Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of StatesFrançois Coste, Jacques Nicolas. ecml 1998: 37-42

How Considering Incompatible State Mergings May Reduce the DFA Induction Search TreeFrançois Coste, Jacques Nicolas. icgi 1998: 199-210 [doi]

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