Andrew Rambaut - researchr alias

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Viewing Publication 1 - 28 from 28

2023

SCORPIO: a utility for defining and classifying mutation constellations of virus genomesRachel Colquhoun, Ben Jackson, Áine Niamh O'toole, Andrew Rambaut. bioinformatics, 39(10), October 2023. [doi]

2021

Massive Parallelization Boosts Big Bayesian Multidimensional ScalingAndrew J. Holbrook, Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut, Marc A. Suchard. jcgs, 30(1):11-24, 2021. [doi]

2019

2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEASTGuy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard. bioinformatics, 33(12):1798-1805, 2017. [doi]

Virus genomes reveal factors that spread and sustained the Ebola epidemicGytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut. nature, 544(7650):309-315, 2017. [doi]

et al. replyRamon Lorenzo-Redondo, Helen R. Fryer, Trevor Bedford, Eun-Young Kim, John A. C. Archer, Sergei L. Kosakovsky Pond, Yoon-Seok Chung, Sudhir Penugonda, Jeffrey G. Chipman, Courtney V. Fletcher, Timothy W. Schacker, Michael H. Malim, Andrew Rambaut, Ashley T. Haase, Angela R. McLean, Steven M. Wolinsky. nature, 551(7681), 2017. [doi]

2015

2014

2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent FrameworkBram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey. iwbbio 2013: 555-556 [doi]

2012

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator IIJohn Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson. bmcbi, 13:47, 2012. [doi]

2011

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamicsFilip Bielejec, Andrew Rambaut, Marc A. Suchard, Philippe Lemey. bioinformatics, 27(20):2910-2912, 2011. [doi]

2010

The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep ApproachJohn Archer, Andrew Rambaut, Bruce E. Taillon, P. Richard Harrigan, Marilyn Lewis, David L. Robertson. ploscb, 6(12), 2010. [doi]

2009

The RNA Virus DatabaseRobert Belshaw, Tulio de Oliveira, Sidney Markowitz, Andrew Rambaut. nar, 37(Database-Issue):431-435, 2009. [doi]

Bayesian Phylogeography Finds Its RootsPhilippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard. ploscb, 5(9), 2009. [doi]

Many-core algorithms for statistical phylogeneticsMarc A. Suchard, Andrew Rambaut. bioinformatics, 25(11):1370-1376, 2009. [doi]

2008

Estimation of an ::::in vivo:::: fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatmentKoen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme. bioinformatics, 24(1):34-41, 2008. [doi]

2007

2002

GENIE: estimating demographic history from molecular phylogeniesO. G. Pybus, Andrew Rambaut. bioinformatics, 18(10):1404-1405, 2002.

2000

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogeniesAndrew Rambaut. bioinformatics, 16(4):395-399, 2000.

1997

PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic treesN. C. Grassly, J. Adachi, Andrew Rambaut. bioinformatics, 13(5):559-560, 1997.

End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequencesAndrew Rambaut, P. H. Harvey, S. Nee. bioinformatics, 13(3):303-306, 1997.

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic treesAndrew Rambaut, N. C. Grassly. bioinformatics, 13(3):235-238, 1997.

1996

Bi-De: an application for simulating phylogenetic processesAndrew Rambaut, N. C. Grassly, S. Nee, P. H. Harvey. bioinformatics, 12(6):469-471, 1996.

1995

Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative dataA. Purvis, Andrew Rambaut. bioinformatics, 11(3):247-251, 1995.

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