Philippe Lemey - researchr alias

researchr

You are not signed in
Sign in
Sign up

Viewing Publication 1 - 25 from 25

2024

Many-core algorithms for high-dimensional gradients on phylogenetic treesKarthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen IV, Marc A. Suchard. bioinformatics, 40(2), February 2024. [doi]

2023

Accelerating Bayesian inference of dependency between mixed-type biological traitsZhenyu Zhang, Akihiko Nishimura, Nídia S. Trovão, Joshua L. Cherry, Andrew J. Holbrook, Xiang Ji, Philippe Lemey, Marc A. Suchard. ploscb, 19(8), 2023. [doi]

2021

Massive Parallelization Boosts Big Bayesian Multidimensional ScalingAndrew J. Holbrook, Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut, Marc A. Suchard. jcgs, 30(1):11-24, 2021. [doi]

2020

2018

Bayesian Best-Arm Identification for Selecting Influenza Mitigation StrategiesPieter J. K. Libin, Timothy Verstraeten, Diederik M. Roijers, Jelena Grujic, Kristof Theys, Philippe Lemey, Ann Nowé. pkdd 2019: 456-471 [doi]

2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEASTGuy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard. bioinformatics, 33(12):1798-1805, 2017. [doi]

Virus genomes reveal factors that spread and sustained the Ebola epidemicGytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut. nature, 544(7650):309-315, 2017. [doi]

2016

SERAPHIM: studying environmental rasters and phylogenetically informed movementsSimon Dellicour, Rebecca Rose, Nuno R. Faria, Philippe Lemey, Oliver G. Pybus. bioinformatics, 32(20):3204-3206, 2016. [doi]

2015

2014

2013

2012

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selectionPhilippe Lemey, Vladimir N. Minin, Filip Bielejec, Sergei L. Kosakovsky Pond, Marc A. Suchard. bioinformatics, 28(24):3248-3256, 2012. [doi]

2011

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamicsFilip Bielejec, Andrew Rambaut, Marc A. Suchard, Philippe Lemey. bioinformatics, 27(20):2910-2912, 2011. [doi]

2010

2009

Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanningPhilippe Lemey, Martin Lott, Darren P. Martin, Vincent Moulton. bmcbi, 10, 2009. [doi]

Bayesian Phylogeography Finds Its RootsPhilippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard. ploscb, 5(9), 2009. [doi]

2008

Estimation of an ::::in vivo:::: fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatmentKoen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme. bioinformatics, 24(1):34-41, 2008. [doi]

2007

2005

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inferenceDimitris Paraskevis, Koen Deforche, Philippe Lemey, G. Magiorkinis, A. Hatzakis, Anne-Mieke Vandamme. bioinformatics, 21(7):1274-1275, 2005. [doi]

Sign in or sign up to see more results.

runs on WebDSL