Robert W. Shafer - researchr alias

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Viewing Publication 1 - 13 from 13

2017

NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequencesPhilip L. Tzou, Xiaoqiu Huang, Robert W. Shafer. bmcbi, 18(1), 2017. [doi]

2011

A multifaceted analysis of HIV-1 protease multidrug resistance phenotypesKathleen M. Doherty, Priyanka Nakka, Bracken M. King, Soo-Yon Rhee, Susan P. Holmes, Robert W. Shafer, Mala L. Radhakrishnan. bmcbi, 12:477, 2011. [doi]

2010

2009

The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistanceRobert J. Gifford, Tommy F. Liu, Soo-Yon Rhee, Mark Kiuchi, Stephane Hue, Deenan Pillay, Robert W. Shafer. bioinformatics, 25(9):1197-1198, 2009. [doi]

2008

Viral Population Estimation Using PyrosequencingNicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel. ploscb, 4(5), 2008. [doi]

2007

HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid CovariationSoo-Yon Rhee, Tommy F. Liu, Susan P. Holmes, Robert W. Shafer. ploscb, 3(5), 2007. [doi]

2006

Prediction of HIV Mutation Changes based on Treatment HistoryRay S. Lin, Soo-Yon Rhee, Robert W. Shafer, Amar K. Das. amia 2006: [doi]

2003

Human immunodeficiency virus reverse transcriptase and protease sequence databaseSoo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, Robert W. Shafer. nar, 31(1):298-303, 2003.

2002

Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN)Matthew J. Gonzales, Jonathan M. Dugan, Robert W. Shafer. bioinformatics, 18(6):886-887, 2002.

2001

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database: an expanded data model integrating natural language text and sequence analysis programsRami Kantor, Rhoderick Machekano, Matthew J. Gonzales, Kathryn Dupnik, Jonathan M. Schapiro, Robert W. Shafer. nar, 29(1):296-299, 2001.

2000

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence DatabaseRobert W. Shafer, Duane R. Jung, Bradley J. Betts, Yinong Xi, Matthew J. Gonzales. nar, 28(1):346-348, 2000.

1999

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence DatabaseRobert W. Shafer, Derek Stevenson, Bryan Chan. nar, 27(1):348-352, 1999.

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