Xiaoqiu Huang - researchr alias

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Viewing Publication 1 - 36 from 36

2017

NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequencesPhilip L. Tzou, Xiaoqiu Huang, Robert W. Shafer. bmcbi, 18(1), 2017. [doi]

2014

Box office prediction based on microblogJingfei Du, Hua Xu, Xiaoqiu Huang. eswa, 41(4):1680-1689, 2014. [doi]

Constrained-hLDA for Topic Discovery in Chinese MicroblogsWei Wang, Hua Xu, Weiwei Yang, Xiaoqiu Huang. pakdd 2014: 608-619 [doi]

2013

Implicit Feature Detection via a Constrained Topic Model and SVMWei Wang, Hua Xu, Xiaoqiu Huang. emnlp 2013: 903-907 [doi]

2011

Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution MatricesAnkit Agrawal, Xiaoqiu Huang. tcbb, 8(1):194-205, 2011. [doi]

2010

Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution MatricesAnkit Agrawal, Alok N. Choudhary, Xiaoqiu Huang. biocomp 2010: 262-268

Derived distribution points heuristic for fast pairwise statistical significance estimationAnkit Agrawal, Alok N. Choudhary, Xiaoqiu Huang. bcb 2010: 312-321 [doi]

2009

PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significanceAnkit Agrawal, Xiaoqiu Huang. bioinformatics, 25(8):1082-1083, 2009. [doi]

Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penaltyAnkit Agrawal, Xiaoqiu Huang. bmcbi, 10(S-3), 2009. [doi]

Maximum Similarity: A New Formulation of Phylogenetic ReconstructionXiaoqiu Huang, Martin Vingron. jcb, 16(7):887-896, 2009. [doi]

2008

Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter SetsAnkit Agrawal, Xiaoqiu Huang. cit 2008: 89-93 [doi]

Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein SequencesAnkit Agrawal, Volker Brendel, Xiaoqiu Huang. isbra 2008: 50-61 [doi]

Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific DistanceAnkit Agrawal, Xiaoqiu Huang. cit 2008: 94-99 [doi]

Pairwise statistical significance of local sequence alignment using multiple parameter setsAnkit Agrawal, Xiaoqiu Huang. CIKM 2008: 53-60 [doi]

DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratioAnkit Agrawal, Xiaoqiu Huang. eit 2008: 453-455 [doi]

Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid CompositionAnkit Agrawal, Arka P. Ghosh, Xiaoqiu Huang. isbra 2008: 62-73 [doi]

Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence AlignmentAnkit Agrawal, Xiaoqiu Huang. bibm 2008: 433-436 [doi]

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignmentAnkit Agrawal, Volker Brendel, Xiaoqiu Huang. ijcbdd, 1(4):347-367, 2008. [doi]

Sequence Alignment with an Appropriate Substitution MatrixXiaoqiu Huang. jcb, 15(2):129-138, 2008. [doi]

2005

A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverageJianmin Wang, Xiaoqiu Huang. bmcbi, 6:220, 2005. [doi]

2004

2003

2002

Parallel Syntenic AlignmentsNatsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang. hipc 2002: 420-430 [doi]

1998

Performance of the CAP2 sequence assembly programXiaoqiu Huang. dimacs 1999: 259-270

1994

A Context Dependent Method for Comparing SequencesXiaoqiu Huang. cpm 1994: 54-63

Parametric Recomuting in Alignment GraphsXiaoqiu Huang, Pavel A. Pevzner, Webb Miller. cpm 1994: 87-101

1992

Parallelization of a local similarity algorithmXiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison. bioinformatics, 8(2):155-165, 1992.

1990

A space-efficient algorithm for local similaritiesXiaoqiu Huang, Ross C. Hardison, Webb Miller. bioinformatics, 6(4):373-381, 1990.

Computing Local Sequence Similarities on a HypercubeXiaoqiu Huang. icpp 1990: 360-361

1989

A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessorXiaoqiu Huang. ijpp, 18(3):223-239, 1989. [doi]

1988

A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost FunctionXiaoqiu Huang. ipl, 27(6):319-321, 1988.

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