Edward C. Holmes - researchr alias

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Viewing Publication 1 - 8 from 8

2025

Artificial intelligence for modelling infectious disease epidemicsMoritz U. G. Kraemer, Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott, Sumali Bajaj, Neil Scheidwasser, Jacob Liam Curran-Sebastian, Elizaveta Semenova, Mengyan Zhang, H. Juliette T. Unwin, Oliver J. Watson, Cathal Mills, Abhishek Dasgupta, Luca Ferretti, Samuel V. Scarpino, Etien Koua, Oliver Morgan, Houriiyah Tegally, Ulrich Paquet, Loukas Moutsianas, Christophe Fraser, Neil M. Ferguson, Eric J. Topol, David A. Duchêne, Tanja Stadler, Patricia Kingori, Michael J. Parker, Francesca Dominici, Nigel Shadbolt, Marc A. Suchard, Oliver Ratmann, Seth R. Flaxman, Edward C. Holmes, Manuel Gomez-Rodriguez, Bernhard Schölkopf, Christl A. Donnelly, Oliver G. Pybus, Simon Cauchemez, Samir Bhatt. nature, 638(8051):623-635, February 2025. [doi]

2021

Collecting and managing taxonomic data with NCBI-taxonomistJan P. Buchmann, Edward C. Holmes. bioinformatics, 36(22-23):5548-5550, 2021. [doi]

Bioinformatics resources for SARS-CoV-2 discovery and surveillanceTao Hu, Juan Li, Hong Zhou, Cixiu Li, Edward C. Holmes, Weifeng Shi. bib, 22(2):631-641, 2021. [doi]

2019

Entrezpy: a Python library to dynamically interact with the NCBI Entrez databasesJan P. Buchmann, Edward C. Holmes. bioinformatics, 35(21):4511-4514, 2019. [doi]

2017

Sorting permutations: Games, genomes, and cyclesK. L. M. Adamyk, Edward C. Holmes, G. R. Mayfield, D. J. Moritz, M. Scheepers, B. E. Tenner, H. C. Wauck. dmaa, 9(5):1-31, 2017. [doi]

Virus genomes reveal factors that spread and sustained the Ebola epidemicGytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut. nature, 544(7650):309-315, 2017. [doi]

2016

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methodsSebastián Duchêne, Jemma L. Geoghegan, Edward C. Holmes, Simon Y. W. Ho. bioinformatics, 32(22):3375-3379, 2016. [doi]

2009

Discovering the Phylodynamics of RNA VirusesEdward C. Holmes, Bryan T. Grenfell. ploscb, 5(10), 2009. [doi]

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