Nick Goldman - researchr alias

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Viewing Publication 1 - 18 from 18

2022

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasetsNicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman. ploscb, 18(4), 2022. [doi]

2021

2015

Music of the SpheresCharlotte Jarvis, Nick Goldman. eva 2015: [doi]

2014

Phylogenetic Quantification of Intra-tumour HeterogeneityRoland F. Schwarz, Anne Trinh, Botond Sipos, James D. Brenton, Nick Goldman, Florian Markowetz. ploscb, 10(4), 2014. [doi]

2013

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project DatasetTjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton. ploscb, 9(12), 2013. [doi]

Towards practical, high-capacity, low-maintenance information storage in synthesized DNANick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust, Botond Sipos, Ewan Birney. nature, 494(7435):77-80, 2013. [doi]

2012

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithmAri Löytynoja, Albert J. Vilella, Nick Goldman. bioinformatics, 28(13):1684-1691, 2012. [doi]

Error-correcting properties of the SOLiD Exact Call ChemistryTim Massingham, Nick Goldman. bmcbi, 13:145, 2012. [doi]

2011

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environmentBotond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman. bmcbi, 12:104, 2011. [doi]

2010

Genomic DNA ::::k::::-mer Spectra: Models and ModalitiesBenny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham. recomb 2010: 571 [doi]

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browserAri Löytynoja, Nick Goldman. bmcbi, 11:579, 2010. [doi]

2008

Determination and validation of principal gene productsMichael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer Harrow, Alfonso Valencia. bioinformatics, 24(1):11-17, 2008. [doi]

2006

XRate: a fast prototyping, training and annotation tool for phylo-grammarsPeter S. Klosterman, Andrew V. Uzilov, Yuri R. BendaÃ±a, Robert K. Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian Holmes. bmcbi, 7:428, 2006. [doi]

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred treesSimon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman. nar, 34(Database-Issue):327-331, 2006. [doi]

2003

Pandit: a database of protein and associated nucleotide domains with inferred treesSimon Whelan, Paul I. W. de Bakker, Nick Goldman. bioinformatics, 19(12):1556-1563, 2003.

2000

EDIBLE: experimental design and information calculations in phylogeneticsTim Massingham, Nick Goldman. bioinformatics, 16(3):294-295, 2000.

1996

The Performance of Transversion Based Distance EstimatesMichael Schöniger, Nick Goldman. gcb 1997: 294-295

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