| 597 | -- | 605 | Qian Liu, Aaron J. Mackey, David S. Roos, Fernando C. N. Pereira. Evigan: a hidden variable model for integrating gene evidence for eukaryotic gene prediction |
| 606 | -- | 612 | Onur Sakarya, Kenneth S. Kosik, Todd H. Oakley. Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony |
| 613 | -- | 620 | J. D. Fischer, C. E. Mayer, Johannes Söding. Prediction of protein functional residues from sequence by probability density estimation |
| 621 | -- | 628 | Igor V. Tetko, Igor V. Rodchenkov, Mathias C. Walter, Thomas Rattei, Hans-Werner Mewes. Beyond the best match: machine learning annotation of protein sequences by integration of different sources of information |
| 629 | -- | 636 | Leping Li, Robert L. Bass, Yu Liang. fdrMotif: identifying ::::cis::::-elements by an EM algorithm coupled with false discovery rate control |
| 637 | -- | 644 | Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler. Using native and syntenically mapped cDNA alignments to improve ::::de novo:::: gene finding |
| 645 | -- | 651 | Arun Siddharth Konagurthu, Peter J. Stuckey, Arthur M. Lesk. Structural search and retrieval using a tableau representation of protein folding patterns |
| 652 | -- | 658 | Julie Bernauer, Ranjit Prasad Bahadur, Francis Rodier, Joël Janin, Anne Poupon. DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions |
| 659 | -- | 665 | Changjun Chen, Yi Xiao. Observation of multiple folding pathways of ::::beta::::-hairpin trpzip2 from independent continuous folding trajectories |
| 666 | -- | 673 | Yinglei Lai. Genome-wide co-expression based prediction of differential expressions |
| 674 | -- | 681 | Jainab Khatun, Eric Hamlett, Morgan C. Giddings. Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification |
| 682 | -- | 688 | Laurent Bréhélin, Olivier Gascuel, Olivier Martin. Using repeated measurements to validate hierarchical gene clusters |
| 689 | -- | 695 | Ramazan Saeed, Charlotte M. Deane. An assessment of the uses of homologous interactions |
| 696 | -- | 703 | Nicolas Thierry-Mieg, Gilles Bailly. Interpool: interpreting smart-pooling results |
| 704 | -- | 710 | Andreas Kremling, Katja Bettenbrock, Ernst Dieter Gilles. A feed-forward loop guarantees robust behavior in ::::Escherichia coli:::: carbohydrate uptake |
| 711 | -- | 712 | Simon Gog, Martin Bader, Enno Ohlebusch. GENESIS: genome evolution scenarios |
| 713 | -- | 714 | Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang. SOAP: short oligonucleotide alignment program |
| 715 | -- | 716 | Stephen A. Smith, Casey W. Dunn. Phyutility: a phyloinformatics tool for trees, alignments and molecular data |
| 717 | -- | 718 | J. D. Moore, R. G. Allaby. TreeMos: a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism |
| 719 | -- | 720 | Peter Langfelder, Bin Zhang, Steve Horvath. Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R |
| 721 | -- | 723 | Jian Yang, Chengcheng Hu, Han Hu, Rongdong Yu, Zhen Xia, Xiuzi Ye, Jun Zhu. QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations |
| 724 | -- | 726 | Mario Falchi, Christian Fuchsberger. Jenti: an efficient tool for mining complex inbred genealogies |
| 727 | -- | 728 | Martijn J. Schuemie, Jan A. Kors. Jane: suggesting journals, finding experts |
| 729 | -- | 731 | Giorgio Valentini, Nicolò Cesa-Bianchi. HCGene: a software tool to support the hierarchical classification of genes |
| 732 | -- | 737 | Alexander Lüdemann, Katrin Strassburg, Alexander Erban, Joachim Kopka. TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments |
| 738 | -- | 740 | Sorin Draghici, Adi L. Tarca, Longfei Yu, Stephen Ethier, Roberto Romero. KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours |