John Parkinson - researchr alias

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Viewing Publication 1 - 28 from 28

2026

Correction: ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondiiLakshmipuram S. Swapna, Grant C. Stevens, Aline Sardinha-Silva, Lucas Zhongming Hu, Verena Brand, Daniel D. Fusca, Cuihong Wan, Xuejian Xiong, Jon P. Boyle, Michael E. Grigg, Andrew Emili, John Parkinson. ploscb, 22(3):1014086, 2026. [doi]

2024

2022

Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotationNirvana Nursimulu, Alan M. Moses, John Parkinson. ploscb, 18(9):1010452, September 2022. [doi]

2020

A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineriesCedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson. ploscb, 16(4), 2020. [doi]

2018

Improved enzyme annotation with EC-specific cutoffs using DETECT v2Nirvana Nursimulu, Leon L. Xu, James D. Wasmuth, Ivan Krukov, John Parkinson. bioinformatics, 34(19):3393-3395, 2018. [doi]

2016

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the EukaryaGraham L. Cromar, Anthony Zhao, Xuejian Xiong, Lakshmipuram S. Swapna, Noeleen Loughran, Hongyan Song, John Parkinson. biodb, 2016, 2016. [doi]

2015

Hyperscape: visualization for complex biological networksGraham L. Cromar, Anthony Zhao, Alex Yang, John Parkinson. bioinformatics, 31(20):3390-3391, 2015. [doi]

2013

De Novo Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing TechnologyHenry C. M. Leung, Siu-Ming Yiu, John Parkinson, Francis Y. L. Chin. jcb, 20(7):540-550, 2013. [doi]

Identification of a Functional Connectome for Long-Term Fear Memory in MiceAnne L. Wheeler, Cátia M. Teixeira, Afra H. Wang, Xuejian Xiong, Natasa Kovacevic, Jason P. Lerch, Anthony Randal McIntosh, John Parkinson, Paul W. Frankland. ploscb, 9(1), 2013. [doi]

2012

Modelling the Self-Assembly of Elastomeric Proteins Provides Insights into the Evolution of Their Domain ArchitecturesHongyan Song, John Parkinson. ploscb, 8(3), 2012. [doi]

2011

2010

DETECT - a Density Estimation Tool for Enzyme ClassificaTion and its application to ::::Plasmodium falciparum::::Stacy S. Hung, James Wasmuth, Christopher Sanford, John Parkinson. bioinformatics, 26(14):1690-1698, 2010. [doi]

2009

Escherichia coliJosé M. Peregrin-Alvarez, Xuejian Xiong, Chong Su, John Parkinson. ploscb, 5(10), 2009. [doi]

2008

2006

Cell++ - simulating biochemical pathwaysChris Sanford, Matthew L. K. Yip, Carl White, John Parkinson. bioinformatics, 22(23):2918-2925, 2006. [doi]

2005

PartiGeneDB - collating partial genomesJosé M. Peregrin-Alvarez, Andrew Yam, Gaya Sivakumar, John Parkinson. nar, 33(Database-Issue):303-307, 2005. [doi]

Exploring Parasite Gene SpaceJames Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter. bmcbi, 6(S-3), 2005. [doi]

2004

2003

SimiTri-visualizing similarity relationships for groups of sequencesJohn Parkinson, Mark L. Blaxter. bioinformatics, 19(3):390-395, 2003.

2002

Making sense of EST sequences by CLOBBing themJohn Parkinson, David B. Guiliano, Mark L. Blaxter. bmcbi, 3:31, 2002. [doi]

1999

A model for the study and design of teaching situations with ICTSteve Kennewell, Howard Tanner, John Parkinson. ifip3-1 2000: 129-138

1990

Making CASE WorkJohn Parkinson. caise 1990: 21-41

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