Journal: Bioinformatics

Volume 24, Issue 18

1975 -- 1979Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz. A knowledge-based approach to predict intragenic deletions or duplications
1980 -- 1986Matthew N. Davies, Andrew Secker, Alex Alves Freitas, Edward Clark, Jonathan Timmis, Darren R. Flower. Optimizing amino acid groupings for GPCR classification
1987 -- 1993Dariusz Przybylski, Burkhard Rost. Powerful fusion: PSI-BLAST and consensus sequences
1994 -- 2001Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space
2002 -- 2009Majid Masso, Iosif I. Vaisman. Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis
2010 -- 2014Dhammika Amaratunga, Javier Cabrera, Yung-Seop Lee. Enriched random forests
2015 -- 2022Liang Chen, Tiejun Tong, Hongyu Zhao. Considering dependence among genes and markers for false discovery control in eQTL mapping
2023 -- 2029TaeHyun Hwang, Hugues Sicotte, Ze Tian, Baolin Wu, Jean-Pierre Kocher, Dennis A. Wigle, Vipin Kumar, Rui Kuang. Robust and efficient identification of biomarkers by classifying features on graphs
2030 -- 2036Ioanna Tachmazidou, Toby Andrew, Claudio J. Verzilli, Michael R. Johnson, Maria De Iorio. Bayesian survival analysis in genetic association studies
2037 -- 2043Thomas Maiwald, Jens Timmer. Dynamical modeling and multi-experiment fitting with PottersWheel
2044 -- 2050Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr. Integrating metabolic, transcriptional regulatory and signal transduction models in ::::Escherichia coli::::
2051 -- 2056Viviane Galvão, José Garcia Vivas Miranda, Ricardo Ribeiro dos Santos. Development of a two-dimensional agent-based model for chronic chagasic cardiomyopathy after stem cell transplantation
2057 -- 2063Min Zhang, Chen Yao, Zheng Guo, Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li. Apparently low reproducibility of true differential expression discoveries in microarray studies
2064 -- 2070Mudassar Iqbal, Alex Alves Freitas, Colin G. Johnson, Massimo Vergassola. Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data
2071 -- 2078Marco Grzegorczyk, Dirk Husmeier, Kieron D. Edwards, Peter Ghazal, Andrew J. Millar. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler
2079 -- 2085Kathrin Fenner, Junfeng Gao, Stefan Kramer, Lynda B. M. Ellis, Lawrence P. Wackett. Data-driven extraction of relative reasoning rules to limit combinatorial explosion in biodegradation pathway prediction
2086 -- 2093Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur. Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users
2094 -- 2095Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi. MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence
2096 -- 2097Richard C. G. Holland, Thomas A. Down, Matthew R. Pocock, Andreas Prlic, David Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael Heuer, Mark J. Schreiber. BioJava: an open-source framework for bioinformatics
2098 -- 2100Campbell O. Webb, David D. Ackerly, Steven W. Kembel. Phylocom: software for the analysis of phylogenetic community structure and trait evolution
2101 -- 2102Romain Gautier, Dominique Douguet, Bruno Antonny, Guillaume Drin. HELIQUEST: a web server to screen sequences with specific alpha-helical properties
2103 -- 2104William D. Nelson, Kert Viele, Bert C. Lynn. An integrated approach for automating validation of extracted ion chromatographic peaks
2105 -- 2107Ryan Abo, Stacey Knight, Jathine Wong, Angela Cox, Nicola J. Camp. hapConstructor: automatic construction and testing of haplotypes in a Monte Carlo framework
2108 -- 2109Torsten Blum, Oliver Kohlbacher. MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization
2110 -- 2111H. Ramos, P. Shannon, Ruedi Aebersold. The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data
2112 -- 2114Robert Kincaid, Allan Kuchinsky, Michael L. Creech. VistaClara: an expression browser plug-in for Cytoscape
2115 -- 2116Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer. ProCope - protein complex prediction and evaluation
2117 -- 2118Bing Xiong, Ke Liu, Jie Wu, David L. Burk, Hualiang Jiang, Jingkang Shen. DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks
2119 -- 2121Rafael C. Jimenez, Antony F. Quinn, Alexander Garcia, Alberto Labarga, Kieran O Neill, Fernando Martinez, Gustavo A. Salazar, Henning Hermjakob. Dasty2, an Ajax protein DAS client
2122 -- 2123Catherine M. Lloyd, James R. Lawson, Peter J. Hunter, P. F. Nielsen. The CellML Model Repository
2124 -- 2125Miguel Pignatelli, Gabriel Aparício, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames. Metagenomics reveals our incomplete knowledge of global diversity