Journal: Bioinformatics

Volume 24, Issue 9

1121 -- 1128Xin Chen, Lingqiong Guo, Zhaocheng Fan, Tao Jiang. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data
1129 -- 1136Haiquan Li, Xinbin Dai, Xuechun Zhao. A nearest neighbor approach for automated transporter prediction and categorization from protein sequences
1137 -- 1144Victor I. Lesk, Michael J. E. Sternberg. 3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm
1145 -- 1153Aleksandar Poleksic, Mark A. Fienup. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms
1154 -- 1160Andrey A. Shabalin, Håkon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel. Merging two gene-expression studies via cross-platform normalization
1161 -- 1167Reid F. Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally. An analytical pipeline for genomic representations used for cytosine methylation studies
1168 -- 1174Meaza Demissie, Barbara Mascialino, Stefano Calza, Yudi Pawitan. Unequal group variances in microarray data analyses
1175 -- 1182Caiyan Li, Hongzhe Li. Network-constrained regularization and variable selection for analysis of genomic data
1183 -- 1190Cheng-Long Chuang, Chih-Hung Jen, Chung-Ming Chen, Grace S. Shieh. A pattern recognition approach to infer time-lagged genetic interactions
1191 -- 1197Bayu Jayawardhana, Douglas B. Kell, Magnus Rattray. Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo
1198 -- 1205Yuanyuan Xiao, Mark R. Segal. Biological sequence classification utilizing positive and unlabeled data
1206 -- 1207Christian X. Weichenberger, Piotr Byzia, Manfred J. Sippl. Visualization of unfavorable interactions in protein folds
1208 -- 1209Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano. ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data
1210 -- 1211Angeline M. Loh, Steven Wiltshire, Jon Emery, Kim W. Carter, Lyle J. Palmer. Celestial3D: a novel method for 3D visualization of familial data
1212 -- 1213Rodrigo Santamaría, Roberto Therón, Luis Quintales. BicOverlapper: A tool for bicluster visualization
1214 -- 1216Matthew P. Campbell, Louise Royle, Catherine M. Radcliffe, Raymond A. Dwek, Pauline M. Rudd. GlycoBase and autoGU: tools for HPLC-based glycan analysis
1217 -- 1220Xiang Xu, Jinyu Wu, Jian Xiao, Yi Tan, Qiyu Bao, Fangqing Zhao, Xiaokun Li. PlasmoGF: an integrated system for comparative genomics and phylogenetic analysis of ::::Plasmodium:::: gene families
1221 -- 1222Hajo N. Krabbenhöft, Steffen Möller, Daniel Bayer. Integrating ARC grid middleware with Taverna workflows
1223 -- 0Wataru Fujibuchi, Larisa Kiseleva, Takeaki Taniguchi, Hajime Harada, Paul Horton. CellMontage: Similar Expression Profile Search Server