| 2665 | -- | 2671 | Yan Lin, George C. Tseng, Soo Yeon Cheong, Lora J. H. Bean, Stephanie L. Sherman, Eleanor Feingold. Smarter clustering methods for SNP genotype calling |
| 2672 | -- | 2676 | Tim J. Carver, Matthew Berriman, Adrian Tivey, Chinmay Patel, Ulrike Böhme, Bart Barrell, Julian Parkhill, Marie-Adèle Rajandream. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database |
| 2677 | -- | 2683 | Robert K. Bradley, Lior Pachter, Ian Holmes. Specific alignment of structured RNA: stochastic grammars and sequence annealing |
| 2684 | -- | 2690 | Lucie N. Hutchins, Sean M. Murphy, Priyam Singh, Joel H. Graber. Position-dependent motif characterization using non-negative matrix factorization |
| 2691 | -- | 2697 | Ching-Tai Chen, Ei-Wen Yang, Hung-Ju Hsu, Yi-Kun Sun, Wen-Lian Hsu, An-Suei Yang. Protease substrate site predictors derived from machine learning on multilevel substrate phage display data |
| 2698 | -- | 2705 | Mallika Veeramalai, David Gilbert. A novel method for comparing topological models of protein structures enhanced with ligand information |
| 2706 | -- | 2712 | Elmer A. Fernández, María R. Girotti, Juan A. López del Olmo, Andrea S. Llera, Osvaldo L. Podhajcer, Rodolfo J. C. Cantet, Mónica Balzarini. Improving 2D-DIGE protein expression analysis by two-stage linear mixed models: assessing experimental effects in a melanoma cell study |
| 2713 | -- | 2719 | Jean-Marie Cornuet, Filipe Santos, Mark A. Beaumont, Christian P. Robert, Jean-Michel Marin, David J. Balding, Thomas Guillemaud, Arnaud Estoup. Inferring population history with ::::DIY ABC::::: a user-friendly approach to approximate Bayesian computation |
| 2720 | -- | 2725 | YuZhong Zhao, Yun Xu, ZhiHao Wang, Hong Zhang, Guoliang Chen. A better block partition and ligation strategy for individual haplotyping |
| 2726 | -- | 2732 | Heiko Neuweger, Stefan P. Albaum, Michael Dondrup, Marcus Persicke, Tony Watt, Karsten Niehaus, Jens Stoye, Alexander Goesmann. MeltDB: a software platform for the analysis and integration of metabolomics experiment data |
| 2733 | -- | 2739 | Fergal P. Casey, Gerard Cagney, Nevan J. Krogan, Denis C. Shields. Optimal stepwise experimental design for pairwise functional interaction studies |
| 2740 | -- | 2747 | Gang Liu, Dhananjay D. Marathe, Khushi L. Matta, Sriram Neelamegham. Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands |
| 2748 | -- | 2754 | Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros. Stochastic dynamics of genetic networks: modelling and parameter identification |
| 2755 | -- | 2759 | Jiri Jablonsky, Petr Susila, Dusan Lazar. Impact of dimeric organization of enzyme on its function: the case of photosynthetic water splitting |
| 2760 | -- | 2766 | Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States. A bioinformatics analysis of the cell line nomenclature |
| 2767 | -- | 2772 | Gabrielle A. Reeves, Karen Eilbeck, Michele Magrane, Claire O Donovan, Luisa Montecchi-Palazzi, Midori A. Harris, Sandra E. Orchard, Rafael C. Jimenez, Andreas Prlic, Tim J. P. Hubbard, Henning Hermjakob, Janet M. Thornton. The Protein Feature Ontology: a tool for the unification of protein feature annotations |
| 2773 | -- | 2775 | Peng-An Chen, Hsiao-Fei Liu, Kun-Mao Chao. CNVDetector: locating copy number variations using array CGH data |
| 2776 | -- | 2777 | Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman. Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications |
| 2778 | -- | 2779 | Thorhildur Juliusdottir, Fredrik Pettersson, Richard R. Copley. POPE - a tool to aid high-throughput phylogenetic analysis |
| 2780 | -- | 2781 | Liisa Holm, S. Kääriäinen, Päivi Rosenström, A. Schenkel. Searching protein structure databases with DaliLite v.3 |
| 2782 | -- | 2783 | Michael Heymann, David Paramelle, Gilles Subra, Eric Forest, Jean Martinez, Christophe Geourjon, Gilbert Deléage. MSX-3D: a tool to validate 3D protein models using mass spectrometry |
| 2784 | -- | 2785 | Marit Holden, Shiwei Deng, Leszek Wojnowski, Bettina Kulle. GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies |
| 2786 | -- | 2787 | Ryan D. Hernandez. A flexible forward simulator for populations subject to selection and demography |
| 2788 | -- | 2789 | Roby Joehanes, James C. Nelson. QGene 4.0, an extensible Java QTL-analysis platform |
| 2790 | -- | 2791 | Anna Ramírez-Soriano, Francesc Calafell. FABSIM: a software for generating ::::F::::::::::ST:::::: distributions with various ascertainment biases |
| 2792 | -- | 2793 | Josselin Noirel, Guido Sanguinetti, Phillip C. Wright. Identifying differentially expressed subnetworks with MMG |
| 2794 | -- | 2795 | Tom S. Price, Julie E. Baggs, Anne M. Curtis, Garret A. FitzGerald, John B. Hogenesch. WAVECLOCK: wavelet analysis of circadian oscillation |
| 2796 | -- | 2797 | John T. Prince, Edward M. Marcotte. mspire: mass spectrometry proteomics in Ruby |
| 2798 | -- | 2800 | Yuelin Zhu, Sean Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen. GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus |
| 2801 | -- | 2802 | Dihui Lu, Richard Z. Liu, Victoria Izumi, David A. Fenstermacher, Eric B. Haura, John Koomen, Steven Eschrich. IPEP: an ::::in silico:::: tool to examine proteolytic peptides for mass spectrometry |
| 2803 | -- | 2804 | Geoffrey L. Winsor, Bhavjinder Khaira, Thea Van Rossum, Raymond Lo, Matthew D. Whiteside, Fiona S. L. Brinkman. The Burkholderia Genome Database: facilitating flexible queries and comparative analyses |
| 2805 | -- | 0 | Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús A. Izaguirre. Addendum. Cytoprophet: a ::::Cytoscape:::: plug-in for protein and domain interaction networks inference |