Journal: Bioinformatics

Volume 24, Issue 6

741 -- 743Scott Grandison, Richard J. Morris. Biological pathway kinetic rate constants are scale-invariant
744 -- 750Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne. A machine-learning approach to combined evidence validation of genome assemblies
751 -- 758Robin Andersson, Carl E. G. Bruder, Arkadiusz Piotrowski, Uwe Menzel, Helena Nord, Johanna Sandgren, Torgeir R. Hvidsten, Teresita Diaz de Ståhl, Jan P. Dumanski, Henryk Jan Komorowski. A segmental maximum a posteriori approach to genome-wide copy number profiling
759 -- 767Henrik Bengtsson, Rafael A. Irizarry, Benilton Carvalho, Terence P. Speed. Estimation and assessment of raw copy numbers at the single locus level
768 -- 774Guillem Rigaill, Philippe Hupé, Anna Almeida, Philippe La Rosa, Jean-Philippe Meyniel, Charles Decraene, Emmanuel Barillot. ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
775 -- 782Nanjiang Shu, Tuping Zhou, Sven Hovmöller. Prediction of zinc-binding sites in proteins from sequence
783 -- 790Anuj R. Shah, Christopher S. Oehmen, Bobbie-Jo M. Webb-Robertson. SVM-HUSTLE - an iterative semi-supervised machine learning approach for pairwise protein remote homology detection
791 -- 797Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu. Compressed indexing and local alignment of DNA
798 -- 806Mark N. Wass, Michael J. E. Sternberg. ConFunc - functional annotation in the twilight zone
807 -- 814Andreas Biegert, Johannes Söding. ::::De novo:::: identification of highly diverged protein repeats by probabilistic consistency
815 -- 825Bruce R. Southey, Jonathan V. Sweedler, Sandra L. Rodriguez-Zas. Prediction of neuropeptide cleavage sites in insects
826 -- 832Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller. Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion
833 -- 839Vladislav Vyshemirsky, Mark Girolami. Bayesian ranking of biochemical system models
840 -- 847Julio Saez-Rodriguez, Arthur Goldsipe, Jeremy Muhlich, Leonidas G. Alexopoulos, Bjorn Millard, Douglas A. Lauffenburger, Peter K. Sorger. Flexible informatics for linking experimental data to mathematical models via ::::DataRail::::
848 -- 854Henning Schmidt, Mads F. Madsen, Sune Danø, Gunnar Cedersund. Complexity reduction of biochemical rate expressions
855 -- 860Frank M. Graziano, Samira Y. Kettoola, Judy M. Munshower, Jack T. Stapleton, George Towfic. Effect of spatial distribution of T-Cells and HIV load on HIV progression
861 -- 862Gavin C. Conant, Kenneth H. Wolfe. GenomeVx: simple web-based creation of editable circular chromosome maps
863 -- 865Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint, Raphaël Leplae. Prophinder: a computational tool for prophage prediction in prokaryotic genomes
866 -- 867B. Slabbinck, Peter Dawyndt, M. Martens, Paul De Vos, Bernard De Baets. TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers
868 -- 869Mark Derthick. Interactive visualization software for exploring phylogenetic trees and clades
870 -- 871Manfred J. Sippl, Stefan J. Suhrer, Markus Gruber, Markus Wiederstein. A discrete view on fold space
872 -- 873Manfred J. Sippl. On distance and similarity in fold space
874 -- 875Yongsung Joo, James G. Booth, Younghwan Namkoong, George Casella. Model-based Bayesian clustering (MBBC)
876 -- 877Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
878 -- 879D. Sarkar, N. Le Meur, Robert Gentleman. Using flowViz to visualize flow cytometry data
880 -- 881Benjamin J. Bornstein, Sarah M. Keating, Akiya Jouraku, Michael Hucka. LibSBML: an API Library for SBML
882 -- 884HyungJun Cho, Yang-jin Kim, Hee Jung Jung, Sang-Won Lee 0002, Jae-Won Lee. OutlierD: an R package for outlier detection using quantile regression on mass spectrometry data
885 -- 887Erick Antezana, Mikel Egaña, Bernard De Baets, Martin Kuiper, Vladimir Mironov. ONTO-PERL: An API for supporting the development and analysis of bio-ontologies