Daniel Gautheret - researchr alias

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Viewing Publication 1 - 19 from 19

2024

k-mer count matrix dimension reductionHaoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret. bioinformatics, 40(3), March 2024. [doi]

2021

2020

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasetsCamille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi. bioinformatics, 36(Supplement-1), 2020. [doi]

2018

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteinsDavid Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P. C. Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel. nar, 46(Webserver-Issue), 2018. [doi]

A benchmark study of scoring methods for non-coding mutationsDamien Drubay, Daniel Gautheret, Stefan Michiels. bioinformatics, 34(10):1635-1641, 2018. [doi]

2015

A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic EventsJia Li, Marie-Anne Poursat, Damien Drubay, Arnaud Motz, Zohra Saci, Antonin Morillon, Stefan Michiels, Daniel Gautheret. ploscb, 11(11), 2015. [doi]

2012

2008

Mireval: a web tool for simple microRNA prediction in genome sequencesWilliam Ritchie, François-Xavier Théodule, Daniel Gautheret. bioinformatics, 24(11):1394-1396, 2008. [doi]

Entropy Measures Quantify Global Splicing Disorders in CancerWilliam Ritchie, Samuel Granjeaud, Denis Puthier, Daniel Gautheret. ploscb, 4(3), 2008. [doi]

2006

Differential Repression of Alternative Transcripts: A Screen for miRNA TargetsMatthieu Legendre, William Ritchie, Fabrice Lopez, Daniel Gautheret. ploscb, 2(5), 2006. [doi]

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylationVincent Le Texier, Jean-Jack M. Riethoven, Vasudev Kumanduri, Chellappa Gopalakrishnan, Fabrice Lopez, Daniel Gautheret, Thangavel Alphonse Thanaraj. bmcbi, 7:169, 2006. [doi]

2005

Computing expectation values for RNA motifs using discrete convolutionsAndré Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret. bmcbi, 6:118, 2005. [doi]

Profile-based detection of microRNA precursors in animal genomesMatthieu Legendre, André Lambert, Daniel Gautheret. bioinformatics, 21(7):841-845, 2005. [doi]

2004

The ERPIN server: an interface to profile-based RNA motif identificationAndré Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret. nar, 32(Web-Server-Issue):160-165, 2004.

1994

An RNA pattern matching program with enhanced performance and portabilityA. Laferriere, Daniel Gautheret, Robert Cedergren. bioinformatics, 10(2):211-212, 1994.

1990

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNADaniel Gautheret, François Major, Robert Cedergren. bioinformatics, 6(4):325-331, 1990.

1988

A secondary and tertiary structure editor for nucleic acidsRobert Cedergren, Daniel Gautheret, Guy Lapalme, François Major. bioinformatics, 4(1):143-146, 1988.

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