Manja Marz - researchr alias

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Viewing Publication 1 - 22 from 22

2026

diffMONT : predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical applicationDaria Meyer, Emanuel Barth, Laura Wiehle, Manja Marz. bioinformatics, 42(2), 2026. [doi]

2025

Go Game Capture and Reconstruction of Missing Moves Using Deep Learning TechniquesRoman Gerloff, Manja Marz, Florian Wahl. cig 2025: 1-8 [doi]

2023

VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov modelsGuillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina A. Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D. Finn. ploscb, 19(8), 2023. [doi]

2021

EpiDope: a deep neural network for linear B-cell epitope predictionMaximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz. bioinformatics, 37(12):1784, 2021. [doi]

EpiDope: a deep neural network for linear B-cell epitope predictionMaximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz. bioinformatics, 37(4):448-455, 2021. [doi]

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus researchFranziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria J. Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes 0001, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz. bib, 22(2):642-663, 2021. [doi]

PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selectionMartin Hölzer, Manja Marz. bioinformatics, 37(7):1018-1020, 2021. [doi]

Rfam 14: expanded coverage of metagenomic, viral and microRNA familiesIoanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov. nar, 49(Database-Issue), 2021. [doi]

VIDHOP, viral host prediction with deep learningFlorian Mock, Adrian Viehweger, Emanuel Barth, Manja Marz. bioinformatics, 37(3):318-325, 2021. [doi]

2020

Tissue-specific Gene Expression Changes Are Associated with Aging in MiceAkash Srivastava, Emanuel Barth, Maria A. Ermolaeva, Madlen Guenther, Christiane Frahm, Manja Marz, Otto W. Witte. gpb, 18(4):430-442, 2020. [doi]

2019

Global importance of RNA secondary structures in protein-coding sequencesMarkus Fricke, Ruman Gerst, Bashar Ibrahim, Michael Niepmann, Manja Marz. bioinformatics, 35(4):579-583, 2019. [doi]

2016

Prediction of conserved long-range RNA-RNA interactions in full viral genomesMarkus Fricke, Manja Marz. bioinformatics, 32(19):2928-2935, 2016. [doi]

2014

2013

2011

Proteinortho: Detection of (Co-)Orthologs in Large-Scale AnalysisMarcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska. bmcbi, 12:124, 2011. [doi]

RNA-RNA interaction prediction based on multiple sequence alignmentsAndrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys. bioinformatics, 27(4):456-463, 2011. [doi]

2010

Temperature-Dependent Structural Variability of RNAs: spliced Leader RNAs and their Evolutionary HistoryManja Marz, Nathalie Vanzo, Peter F. Stadler. jbcb, 8(1):1-17, 2010. [doi]

2009

Converting DNA to Music: ComposAlignTodd Ingalls, Georg Martius, Manja Marz, Sonja J. Proshaka, Marc Hellmuth. gcb 2009: 93-103

2007

U7 snRNAs: A Computational SurveyManja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler. gpb, 5(3-4):187-195, 2007. [doi]

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