| 1655 | -- | 1661 | Shuo Jiao, Shunpu Zhang. On correcting the overestimation of the permutation-based false discovery rate estimator |
| 1662 | -- | 1668 | Håkan Viklund, Arne Elofsson. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar |
| 1669 | -- | 1675 | Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh. Modeling promoter grammars with evolving hidden Markov models |
| 1676 | -- | 1680 | Tiago José P. Sobreira, Arthur Gruber. Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data |
| 1681 | -- | 1687 | Kristoffer Forslund, Erik L. L. Sonnhammer. Predicting protein function from domain content |
| 1688 | -- | 1697 | Reinhard Schachtner, Dominik Lutter, P. Knollmüller, Ana Maria Tomé, Fabian J. Theis, Gerd Schmitz, Martin Stetter, Pedro Gómez Vilda, Elmar Wolfgang Lang. Knowledge-based gene expression classification via matrix factorization |
| 1698 | -- | 1706 | Anne-Laure Boulesteix, Christine Porzelius, Martin Daumer. Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value |
| 1707 | -- | 1714 | E. Purdom, Ken M. Simpson, Mark D. Robinson, J. G. Conboy, A. V. Lapuk, Terence P. Speed. FIRMA: a method for detection of alternative splicing from exon array data |
| 1715 | -- | 1721 | Francesco Pappalardo, Salvatore Musumeci, Santo Motta. Modeling immune system control of atherogenesis |
| 1722 | -- | 1728 | Derek Greene, Gerard Cagney, Nevan J. Krogan, Padraig Cunningham. Ensemble non-negative matrix factorization methods for clustering protein-protein interactions |
| 1729 | -- | 1730 | Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew N. Bainbridge, Steven J. M. Jones. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology |
| 1731 | -- | 1732 | Josep Ramon Goñi, Carlos Fenollosa, Alberto Pérez, David Torrents, Modesto Orozco. DNAlive: a tool for the physical analysis of DNA at the genomic scale |
| 1733 | -- | 1734 | Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke. ChemmineR: a compound mining framework for R |
| 1735 | -- | 1736 | Carl Murie, Robert Nadon. A correction for estimating error when using the Local Pooled Error Statistical Test |
| 1737 | -- | 1739 | Meizhuo Zhang, Rui Feng, Xiang Chen, Buqu Hu, Heping Zhang. LOT: a tool for linkage analysis of ordinal traits for pedigree data |
| 1740 | -- | 1742 | Marzio Pennisi, Roberto Catanuto, Francesco Pappalardo, Santo Motta. Optimal vaccination schedules using simulated annealing |
| 1743 | -- | 1744 | Johannes Goll, Seesandra V. Rajagopala, Shen C. Shiau, Hank Wu, Brian T. Lamb, Peter Uetz. MPIDB: the microbial protein interaction database |