| 2423 | -- | 2426 | Robson Francisco de Souza, Vivek Anantharaman, Sandro José de Souza, L. Aravind, Frederico J. Gueiros-Filho. AMIN domains have a predicted role in localization of diverse periplasmic protein complexes |
| 2427 | -- | 2430 | Fanny Jadeau, Emmanuelle Bechet, Alain J. Cozzone, Gilbert Deléage, Christophe Grangeasse, Christophe Combet. Identification of the idiosyncratic bacterial protein tyrosine kinase (BY-kinase) family signature |
| 2431 | -- | 2437 | Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li. ZOOM! Zillions of oligos mapped |
| 2438 | -- | 2444 | Osamu Gotoh. Direct mapping and alignment of protein sequences onto genomic sequence |
| 2445 | -- | 2452 | Sriram Sankararaman, Kimmen Sjölander. INTREPID - INformation-theoretic TREe traversal for Protein functional site IDentification |
| 2453 | -- | 2459 | Sol Katzman, Christian Barrett, Grant Thiltgen, Rachel Karchin, Kevin Karplus. PREDICT-2ND: a tool for generalized protein local structure prediction |
| 2460 | -- | 2466 | Mirabela Rusu, Stefan Birmanns, Willy Wriggers. Biomolecular pleiomorphism probed by spatial interpolation of coarse models |
| 2467 | -- | 2473 | Chang-Tsun Li, Yinyin Yuan, Roland Wilson. An unsupervised conditional random fields approach for clustering gene expression time series |
| 2474 | -- | 2481 | Xi Chen, Lily Wang, Jonathan D. Smith, Bing Zhang. Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes |
| 2482 | -- | 2490 | Elissa J. Cosgrove, Yingchun Zhou, Timothy S. Gardner, Eric D. Kolaczyk. Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia |
| 2491 | -- | 2497 | Antonio Reverter, Eva K. F. Chan. Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks |
| 2498 | -- | 2504 | Zachary A. Szpiech, Mattias Jakobsson, Noah A. Rosenberg. ADZE: a rarefaction approach for counting alleles private to combinations of populations |
| 2505 | -- | 2511 | Gautam Goel, I-Chun Chou, Eberhard O. Voit. System estimation from metabolic time-series data |
| 2512 | -- | 2517 | Alona Fyshe, Yifeng Liu, Duane Szafron, Russell Greiner, Paul Lu. Improving subcellular localization prediction using text classification and the gene ontology |
| 2518 | -- | 2525 | Justin Klekota, Frederick P. Roth. Chemical substructures that enrich for biological activity |
| 2526 | -- | 2533 | Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gokhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu. PathCase: pathways database system |
| 2534 | -- | 2536 | Darren Kessner, Matt Chambers, Robert Burke, David Agus, Parag Mallick. ProteoWizard: open source software for rapid proteomics tools development |
| 2537 | -- | 2538 | Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey. F-Seq: a feature density estimator for high-throughput sequence tags |
| 2539 | -- | 2541 | Salvador Ramírez-Flandes, Osvaldo Ulloa. Bosque: integrated phylogenetic analysis software |
| 2542 | -- | 2543 | Liang Liu. BEST: Bayesian estimation of species trees under the coalescent model |
| 2544 | -- | 2545 | Denis C. Bauer, Timothy L. Bailey. STREAM: Static Thermodynamic REgulAtory Model of transcription |
| 2546 | -- | 2548 | Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht. Integrating expression data with domain interaction networks |
| 2549 | -- | 2550 | Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz. Analyzing gene perturbation screens with nested effects models in R and bioconductor |
| 2551 | -- | 2553 | Anthony D. Hill, Jonathan R. Tomshine, Emma M. B. Weeding, Vassilios Sotiropoulos, Yiannis N. Kaznessis. SynBioSS: the synthetic biology modeling suite |
| 2554 | -- | 2556 | Guillermo Rodrigo, Javier Carrera, Kristala Jones Prather, Alfonso Jaramillo. DESHARKY: automatic design of metabolic pathways for optimal cell growth |
| 2557 | -- | 2558 | Tian Xia, Julie A. Dickerson. OmicsViz: Cytoscape plug-in for visualizing omics data across species |
| 2559 | -- | 2560 | Yoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. FACTA: a text search engine for finding associated biomedical concepts |
| 2561 | -- | 2563 | Mehdi Pirooznia, Tanwir Habib, Edward J. Perkins, Youping Deng. GOfetcher: a database with complex searching facility for gene ontology |
| 2564 | -- | 2565 | C. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto. varDB: a pathogen-specific sequence database of protein families involved in antigenic variation |
| 2566 | -- | 2568 | Harald Binder, Martin Schumacher. Comment on network-constrained regularization and variable selection for analysis of genomic data |
| 2569 | -- | 0 | Caiyan Li, Hongzhe Li. In Response to Comment on Network-constrained regularization and variable selection for analysis of genomic data |