Journal: Bioinformatics

Volume 26, Issue 13

1579 -- 1586Hiram A. Firpi, Duygu Ucar, Kai Tan. Discover regulatory DNA elements using chromatin signatures and artificial neural network
1587 -- 1594Chunfang Zheng. Pathgroups, a dynamic data structure for genome reconstruction problems
1595 -- 1600Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg. Classification of DNA sequences using Bloom filters
1601 -- 1607Anuj R. Shah, Khushbu Agarwal, Erin S. Baker, Mudita Singhal, Anoop M. Mayampurath, Yehia M. Ibrahim, Lars J. Kangas, Matthew E. Monroe, Rui Zhao, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith. Machine learning based prediction for peptide drift times in ion mobility spectrometry
1608 -- 1615Nancy Y. Yu, James R. Wagner, Matthew R. Laird, Gabor Melli, Sébastien Rey, Raymond Lo, Phuong Dao, Süleyman Cenk Sahinalp, Martin Ester, Leonard J. Foster, Fiona S. L. Brinkman. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
1616 -- 1622Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen. Prediction of protein-RNA binding sites by a random forest method with combined features
1623 -- 1629Manfred Opper, Guido Sanguinetti. Learning combinatorial transcriptional dynamics from gene expression data
1630 -- 1636YanHua Hu, Elvira Osuna-Highley, Juchang Hua, Theodore Scott Nowicki, Robert Stolz, Camille McKayle, Robert F. Murphy. Automated analysis of protein subcellular location in time series images
1637 -- 1643Alan Veliz-Cuba, Abdul Salam Jarrah, Reinhard C. Laubenbacher. Polynomial algebra of discrete models in systems biology
1644 -- 1650Dong Wang, Juan Wang, Ming Lu, Fei Song, Qinghua Cui. Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
1651 -- 1661Michael Baitaluk, Julia V. Ponomarenko. Semantic integration of data on transcriptional regulation
1662 -- 1663Aaron L. Statham, Dario Strbenac, Marcel W. Coolen, Clare Stirzaker, Susan J. Clark, Mark D. Robinson. (no title)
1664 -- 1665Ignacio L. Ibarra, Francisco Melo. Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming
1666 -- 1668Florian Gnad, Shubin Ren, Chunaram Choudhary, Jürgen Cox, Matthias Mann. Predicting post-translational lysine acetylation using support vector machines
1669 -- 1670Thomas Junier, Evgeny M. Zdobnov. The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
1671 -- 1672Christian Schudoma, Patrick May, Dirk Walther. Modeling RNA loops using sequence homology and geometric constraints
1673 -- 1674Reda Rawi, Lee Whitmore, Maya Topf. CHOYCE: a web server for constrained homology modelling with cryoEM maps
1675 -- 1676Maria Rodriguez-Fernandez, Julio R. Banga. SensSB: a software toolbox for the development and sensitivity analysis of systems biology models
1677 -- 1683Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters. A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics