| 2071 | -- | 2075 | Stephen A. Ramsey, Theo A. Knijnenburg, Kathleen A. Kennedy, Daniel E. Zak, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Aaron E. Lampano, Vladimir Litvak, Garnet Navarro, Tetyana Stolyar, Alan Aderem, Ilya Shmulevich. Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites |
| 2076 | -- | 2084 | Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock. EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes |
| 2085 | -- | 2092 | Jasmina Bogojeska, Steffen Bickel, André Altmann, Thomas Lengauer. Dealing with sparse data in predicting outcomes of HIV combination therapies |
| 2093 | -- | 2100 | Roman Pahl, Helmut Schäfer. PERMORY: an LD-exploiting permutation test algorithm for powerful genome-wide association testing |
| 2101 | -- | 2108 | Jirí Macas, Pavel Neumann, Petr Novák, Jiming Jiang. Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data |
| 2109 | -- | 2115 | Manonmani Arunachalam, Karthik Jayasurya, Pavel Tomancak, Uwe Ohler. An alignment-free method to identify candidate orthologous enhancers in multiple ::::Drosophila:::: genomes |
| 2116 | -- | 2120 | Rahul Satija, Jotun Hein, Gerton Lunter. Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques |
| 2121 | -- | 2127 | Liang-Tsung Huang, M. Michael Gromiha. First insight into the prediction of protein folding rate change upon point mutation |
| 2128 | -- | 2135 | Timothy Hancock, Ichigaku Takigawa, Hiroshi Mamitsuka. Mining metabolic pathways through gene expression |
| 2136 | -- | 2144 | Marc Johannes, Jan C. Brase, Holger Fröhlich, Stephan Gade, Mathias C. Gehrmann, Maria Fälth, Holger Sültmann, Tim Beißbarth. Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients |
| 2145 | -- | 2152 | William Rowe, David C. Wedge, Mark Platt, Douglas B. Kell, Joshua D. Knowles. Predictive models for population performance on real biological fitness landscapes |
| 2153 | -- | 2159 | David M. A. Martin, Isabelle R. E. Nett, Franck Vandermoere, Jonathan D. Barber, Nicholas A. Morrice, Michael A. J. Ferguson. Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry |
| 2160 | -- | 2168 | Steffen Klamt, Robert J. Flassig, Kai Sundmacher. TRANSWESD: inferring cellular networks with transitive reduction |
| 2169 | -- | 2175 | Jungsoo Gim, Ho-Shik Kim, Junil Kim, Minsoo Choi, Jeong-Rae Kim, Yeun-Jun Chung, Kwang-Hyun Cho. A system-level investigation into the cellular toxic response mechanism mediated by AhR signal transduction pathway |
| 2176 | -- | 2182 | Di Wu, Elgene Lim, François Vaillant, Marie-Liesse Asselin-Labat, Jane E. Visvader, Gordon K. Smyth. ROAST: rotation gene set tests for complex microarray experiments |
| 2183 | -- | 2189 | Bethany J. Wolf, Elizabeth G. Hill, Elizabeth H. Slate. Logic Forest: an ensemble classifier for discovering logical combinations of binary markers |
| 2190 | -- | 2191 | Cristen J. Willer, Yun Li, Gonçalo R. Abecasis. METAL: fast and efficient meta-analysis of genomewide association scans |
| 2192 | -- | 2194 | Waibhav Tembe, James Lowey, Edward Suh. G-SQZ: compact encoding of genomic sequence and quality data |
| 2195 | -- | 2197 | Kjetil Klepper, Finn Drabløs. PriorsEditor: a tool for the creation and use of positional priors in motif discovery |
| 2198 | -- | 2199 | Malu Luz Calle, Víctor Urrea, Núria Malats, Kristel Van Steen. mbmdr: an R package for exploring gene-gene interactions associated with binary or quantitative traits |
| 2200 | -- | 2201 | Brendan O'Fallon. TreesimJ: a flexible, forward time population genetic simulator |
| 2202 | -- | 2203 | Heiko A. Mannsperger, Stephan Gade, Frauke Henjes, Tim Beißbarth, Ulrike Korf. RPPanalyzer: Analysis of reverse-phase protein array data |
| 2204 | -- | 2207 | W. James Kent, Ann S. Zweig, Galt P. Barber, Angie S. Hinrichs, Donna Karolchik. BigWig and BigBed: enabling browsing of large distributed datasets |
| 2208 | -- | 2209 | Michael Wittig, Ingo Helbig, Stefan Schreiber, Andre Franke. CNVineta: a data mining tool for large case-control copy number variation datasets |
| 2210 | -- | 2211 | Sylvain Brohée, Roland Barriot, Yves Moreau. Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases |
| 2212 | -- | 2213 | Meng-Pin Weng, Ben-Yang Liao. MamPhEA: a web tool for mammalian phenotype enrichment analysis |
| 2215 | -- | 0 | Violeta Calian, Jason C. Hsu. Response to Letter to the Editor by Philip Good on To Permute or Not to Permute |