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153 | -- | 160 | Nancy R. Zhang, Yasin Senbabaoglu, Jun Z. Li. Joint estimation of DNA copy number from multiple platforms |
161 | -- | 167 | Raj K. Gaire, James Bailey, Jennifer Bearfoot, Ian G. Campbell, Peter J. Stuckey, Izhak Haviv. MIRAGAA - a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer |
168 | -- | 174 | Robert T. Morris, Timothy R. O Connor, John J. Wyrick. Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in ::::Saccharomyces cerevisiae:::: |
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182 | -- | 188 | Liam J. McGuffin, Daniel B. Roche. Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments |
189 | -- | 197 | Narendra Kumar, Debasisa Mohanty. Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials |
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205 | -- | 214 | Ramon Xulvi-Brunet, Hongzhe Li. Co-expression networks: graph properties and topological comparisons |
215 | -- | 222 | Ai-Jun Yang, Xin-Yuan Song. Bayesian variable selection for disease classification using gene expression data |
223 | -- | 227 | William Ritchie, Stephane Flamant, John E. J. Rasko. mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets |
228 | -- | 234 | Bin Wang, Xiao Feng Wang, Paul Howell, Xuemin Qian, Kun Huang, Adam I. Riker, Jingfang Ju, Yaguang Xi. A personalized microRNA microarray normalization method using a logistic regression model |
235 | -- | 241 | Runqing Yang, Xin Wang, Zeyuan Wu, Daniel R. Prows, Min Lin. Bayesian model selection for characterizing genomic imprinting effects and patterns |
242 | -- | 249 | Benilton Carvalho, Thomas A. Louis, Rafael A. Irizarry. Quantifying uncertainty in genotype calls |
250 | -- | 258 | Herbert Pang, Debayan Datta, Hongyu Zhao. Pathway analysis using random forests with bivariate node-split for survival outcomes |
259 | -- | 262 | Eric R. Gamazon, Wei Zhang, Anuar Konkashbaev, Shiwei Duan, Emily O. Kistner, Dan L. Nicolae, M. Eileen Dolan, Nancy J. Cox. SCAN: SNP and copy number annotation |
263 | -- | 265 | Jean Muller, Christopher J. Creevey, Julie D. Thompson, Detlev Arendt, Peer Bork. AQUA: automated quality improvement for multiple sequence alignments |
266 | -- | 267 | J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, Rob Knight. PyNAST: a flexible tool for aligning sequences to a template alignment |
268 | -- | 269 | Shihao Shen, Claude C. Warzecha, Russ P. Carstens, Yi Xing. MADS+: discovery of differential splicing events from Affymetrix exon junction array data |
270 | -- | 272 | Kanchana Narayanan, Jing Li. MAVEN: a tool for visualization and functional analysis of genome-wide association results |
273 | -- | 274 | Chris Duran, Zoran Boskovic, Michael Imelfort, Jacqueline Batley, Nicholas A. Hamilton, David Edwards. CMap3D: a 3D visualization tool for comparative genetic maps |
275 | -- | 277 | Fei Li, Peng Li, Wenjian Xu, Yuxing Peng, Xiaochen Bo, Shengqi Wang. PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks |
278 | -- | 279 | Tomás Levitner, Stepán Timr, Dalibor Stys. Expertomica Cells: analysis of cell monolayer development |
280 | -- | 282 | Nathaniel Beagley, Kelly G. Stratton, Bobbie-Jo M. Webb-Robertson. VIBE 2.0: Visual Integration for Bayesian Evaluation |
283 | -- | 284 | Aaron Ikin, Carlos Riveros, Pablo Moscato, Alexandre Mendes. The Gene Interaction Miner: a new tool for data mining contextual information for protein-protein interaction analysis |
285 | -- | 286 | Jesse Paquette, Taku A. Tokuyasu. EGAN: exploratory gene association networks |
287 | -- | 289 | Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian. hPDI: a database of experimental human protein-DNA interactions |
290 | -- | 291 | Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son Phan Tran. LegumeTFDB: an integrative database of ::::Glycine max::::, ::::Lotus japonicus:::: and ::::Medicago truncatula:::: transcription factors |
292 | -- | 293 | Ronglai Shen, Adam B. Olshen, Marc Ladanyi. Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis |