Journal: Bioinformatics

Volume 26, Issue 2

149 -- 152Thiago M. Venancio, L. Aravind. CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes
153 -- 160Nancy R. Zhang, Yasin Senbabaoglu, Jun Z. Li. Joint estimation of DNA copy number from multiple platforms
161 -- 167Raj K. Gaire, James Bailey, Jennifer Bearfoot, Ian G. Campbell, Peter J. Stuckey, Izhak Haviv. MIRAGAA - a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer
168 -- 174Robert T. Morris, Timothy R. O Connor, John J. Wyrick. Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in ::::Saccharomyces cerevisiae::::
175 -- 181Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler. Target prediction and a statistical sampling algorithm for RNA-RNA interaction
182 -- 188Liam J. McGuffin, Daniel B. Roche. Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
189 -- 197Narendra Kumar, Debasisa Mohanty. Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials
198 -- 204Danzhi Huang, Ting Zhou, Karine Lafleur, Cristina Nevado, Amedeo Caflisch. Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis
205 -- 214Ramon Xulvi-Brunet, Hongzhe Li. Co-expression networks: graph properties and topological comparisons
215 -- 222Ai-Jun Yang, Xin-Yuan Song. Bayesian variable selection for disease classification using gene expression data
223 -- 227William Ritchie, Stephane Flamant, John E. J. Rasko. mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets
228 -- 234Bin Wang, Xiao Feng Wang, Paul Howell, Xuemin Qian, Kun Huang, Adam I. Riker, Jingfang Ju, Yaguang Xi. A personalized microRNA microarray normalization method using a logistic regression model
235 -- 241Runqing Yang, Xin Wang, Zeyuan Wu, Daniel R. Prows, Min Lin. Bayesian model selection for characterizing genomic imprinting effects and patterns
242 -- 249Benilton Carvalho, Thomas A. Louis, Rafael A. Irizarry. Quantifying uncertainty in genotype calls
250 -- 258Herbert Pang, Debayan Datta, Hongyu Zhao. Pathway analysis using random forests with bivariate node-split for survival outcomes
259 -- 262Eric R. Gamazon, Wei Zhang, Anuar Konkashbaev, Shiwei Duan, Emily O. Kistner, Dan L. Nicolae, M. Eileen Dolan, Nancy J. Cox. SCAN: SNP and copy number annotation
263 -- 265Jean Muller, Christopher J. Creevey, Julie D. Thompson, Detlev Arendt, Peer Bork. AQUA: automated quality improvement for multiple sequence alignments
266 -- 267J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, Rob Knight. PyNAST: a flexible tool for aligning sequences to a template alignment
268 -- 269Shihao Shen, Claude C. Warzecha, Russ P. Carstens, Yi Xing. MADS+: discovery of differential splicing events from Affymetrix exon junction array data
270 -- 272Kanchana Narayanan, Jing Li. MAVEN: a tool for visualization and functional analysis of genome-wide association results
273 -- 274Chris Duran, Zoran Boskovic, Michael Imelfort, Jacqueline Batley, Nicholas A. Hamilton, David Edwards. CMap3D: a 3D visualization tool for comparative genetic maps
275 -- 277Fei Li, Peng Li, Wenjian Xu, Yuxing Peng, Xiaochen Bo, Shengqi Wang. PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks
278 -- 279Tomás Levitner, Stepán Timr, Dalibor Stys. Expertomica Cells: analysis of cell monolayer development
280 -- 282Nathaniel Beagley, Kelly G. Stratton, Bobbie-Jo M. Webb-Robertson. VIBE 2.0: Visual Integration for Bayesian Evaluation
283 -- 284Aaron Ikin, Carlos Riveros, Pablo Moscato, Alexandre Mendes. The Gene Interaction Miner: a new tool for data mining contextual information for protein-protein interaction analysis
285 -- 286Jesse Paquette, Taku A. Tokuyasu. EGAN: exploratory gene association networks
287 -- 289Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian. hPDI: a database of experimental human protein-DNA interactions
290 -- 291Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son Phan Tran. LegumeTFDB: an integrative database of ::::Glycine max::::, ::::Lotus japonicus:::: and ::::Medicago truncatula:::: transcription factors
292 -- 293Ronglai Shen, Adam B. Olshen, Marc Ladanyi. Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis