| 2501 | -- | 2508 | Jianrong Wang, Ahsan Huda, Victoria V. Lunyak, I. King Jordan. A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags |
| 2509 | -- | 2516 | Son K. Pham, Pavel A. Pevzner. DRIMM-Synteny: decomposing genomes into evolutionary conserved segments |
| 2517 | -- | 2525 | Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu. Detecting two-locus associations allowing for interactions in genome-wide association studies |
| 2526 | -- | 2533 | Xiao Yang, Karin S. Dorman, Srinivas Aluru. Reptile: representative tiling for short read error correction |
| 2534 | -- | 2540 | Guillaume Rizk, Dominique Lavenier. GASSST: global alignment short sequence search tool |
| 2541 | -- | 2548 | Weiqiang Zhou, Hong Yan. A discriminatory function for prediction of protein-DNA interactions based on alpha shape modeling |
| 2549 | -- | 2555 | Wissam Mehio, Graham J. L. Kemp, Paul Taylor, Malcolm D. Walkinshaw. Identification of protein binding surfaces using surface triplet propensities |
| 2556 | -- | 2563 | Anthony Y. C. Kuk, Jinfeng Xu, Yaning Yang. A study of the efficiency of pooling in haplotype estimation |
| 2564 | -- | 2570 | Zohar Itzhaki, Eyal Akiva, Hanah Margalit. Preferential use of protein domain pairs as interaction mediators: order and transitivity |
| 2571 | -- | 2577 | Timo Erkkilä, Saara Lehmusvaara, Pekka Ruusuvuori, Tapio Visakorpi, Ilya Shmulevich, Harri Lähdesmäki. Probabilistic analysis of gene expression measurements from heterogeneous tissues |
| 2578 | -- | 2585 | Devin C. Koestler, Carmen J. Marsit, Brock C. Christensen, Margaret R. Karagas, Raphael Bueno, David J. Sugarbaker, Karl Kelsey, E. Andres Houseman. Semi-supervised recursively partitioned mixture models for identifying cancer subtypes |
| 2586 | -- | 2593 | Zhibao Mi, Kui Shen, Nan Song, Chunrong Cheng, Chi Song, Naftali Kaminski, George C. Tseng. Module-based prediction approach for robust inter-study predictions in microarray data |
| 2594 | -- | 2600 | Cesim Erten, Melih Sözdinler. Improving performances of suboptimal greedy iterative biclustering heuristics via localization |
| 2601 | -- | 2609 | Rick A. Fasani, Michael A. Savageau. Automated construction and analysis of the design space for biochemical systems |
| 2610 | -- | 2614 | Jiantao Yu, Maozu Guo, Chris J. Needham, Yangchao Huang, Lu Cai, David R. Westhead. Simple sequence-based kernels do not predict protein-protein interactions |
| 2615 | -- | 2616 | Roy Ronen, Ido Gan, Shira Modai, Alona Sukacheov, Gideon Dror, Eran Halperin, Noam Shomron. miRNAkey: a software for microRNA deep sequencing analysis |
| 2617 | -- | 2619 | Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Bonnal, Jan Aerts, Toshiaki Katayama. BioRuby: bioinformatics software for the Ruby programming language |
| 2620 | -- | 2621 | Nikos Darzentas. Circoletto: visualizing sequence similarity with Circos |
| 2622 | -- | 2623 | Ivan V. Kulakovskiy, Valentina Boeva, Alexander V. Favorov, Vsevolod Makeev. Deep and wide digging for binding motifs in ChIP-Seq data |
| 2624 | -- | 2625 | D. P. Klose, B. A. Wallace, Robert W. Janes. 2Struc: the secondary structure server |
| 2626 | -- | 2628 | Marco Biasini, Valerio Mariani, Jürgen Haas, Stefan Scheuber, Andreas D. Schenk, Torsten Schwede, Ansgar Philippsen. OpenStructure: a flexible software framework for computational structural biology |
| 2629 | -- | 2630 | Minghua Wang, Man Wai Mok, Hong Harper, Wen-Hwa Lee, Jinrong Min, Stefan Knapp, Udo C. T. Oppermann, Brian Marsden, Matthieu Schapira. Structural genomics of histone tail recognition |
| 2631 | -- | 2632 | Johannes Goll, Douglas B. Rusch, David M. Tanenbaum, Mathangi Thiagarajan, Kelvin Li, Barbara A. Methé, Shibu Yooseph. METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics |
| 2633 | -- | 2634 | Dokyun Na, Doheon Lee. ::::RBSDesigner::::: software for designing synthetic ribosome binding sites that yields a desired level of protein expression |
| 2635 | -- | 2636 | Hafiz Muhammad Shahzad Asif, Matthew D. Rolfe, Jeff Green, Neil D. Lawrence, Magnus Rattray, Guido Sanguinetti. TFInfer: a tool for probabilistic inference of transcription factor activities |
| 2637 | -- | 2638 | Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li, Yi-Xue Li, Yuan-Yuan Li. DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data |
| 2639 | -- | 2640 | Ambarish Biswas, Kalyan C. Mynampati, Shivshankar Umashankar, Sheela Reuben, Gauri Parab, Raghuraj Rao, Velayutham S. Kannan, Sanjay Swarup. MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation |
| 2641 | -- | 2642 | Stefan Hoehme, Dirk Drasdo. A cell-based simulation software for multi-cellular systems |
| 2643 | -- | 2644 | Haiying Wang, Huiru Zheng, Francisco Azuaje. Ontology- and graph-based similarity assessment in biological networks |
| 2645 | -- | 2646 | Selim Mimaroglu, Ertunc Erdil. Obtaining better quality final clustering by merging a collection of clusterings |
| 2647 | -- | 2648 | Gert Wohlgemuth, Pradeep Kumar Haldiya, Egon L. Willighagen, Tobias Kind, Oliver Fiehn. The Chemical Translation Service - a web-based tool to improve standardization of metabolomic reports |
| 2649 | -- | 2650 | Xinyu Zhang, Lin Shi, Yan Liu, Feng Tian, Haitao Zhao, Xiao-Ping Miao, Ming-lie Huang, Xiao-Yan Zhu. ICPS: an integrative cancer profiler system |