| 3007 | -- | 3011 | Brenton Louie, Roger Higdon, Eugene Kolker. The necessity of adjusting tests of protein category enrichment in discovery proteomics |
| 3012 | -- | 3019 | István Miklós, Eric Tannier. Bayesian sampling of genomic rearrangement scenarios via double cut and join |
| 3020 | -- | 3027 | Sandro Morganella, Luigi Cerulo, Giuseppe Viglietto, Michele Ceccarelli. VEGA: variational segmentation for copy number detection |
| 3028 | -- | 3034 | Yuchun Guo, Georgios Papachristoudis, Robert C. Altshuler, Georg K. Gerber, Tommi Jaakkola, David K. Gifford, Shaun Mahony. Discovering homotypic binding events at high spatial resolution |
| 3035 | -- | 3042 | Bertrand Servin, Simon de Givry, Thomas Faraut. Statistical confidence measures for genome maps: application to the validation of genome assemblies |
| 3043 | -- | 3050 | Vetriselvi Rangannan, Manju Bansal. High-quality annotation of promoter regions for 913 bacterial genomes |
| 3051 | -- | 3058 | Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré. CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data |
| 3059 | -- | 3066 | Ryan Day, Kristin P. Lennox, David B. Dahl, Marina Vannucci, Jerry Tsai. Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure |
| 3067 | -- | 3074 | Arjun Ray, Erik Lindahl, Björn Wallner. Model quality assessment for membrane proteins |
| 3075 | -- | 3082 | Raquel Cardoso de Melo Minardi, Karine Bastard, François Artiguenave. Identification of subfamily-specific sites based on active sites modeling and clustering |
| 3083 | -- | 3089 | Edi Prifti, Jean-Daniel Zucker, Karine Clément, Corneliu Henegar. Interactional and functional centrality in transcriptional co-expression networks |
| 3090 | -- | 3097 | Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano. Model-free unsupervised gene set screening based on information enrichment in expression profiles |
| 3098 | -- | 3104 | Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty. State reduction for network intervention in probabilistic Boolean networks |
| 3105 | -- | 3111 | Bing Liu 0002, Lin Liu, Anna Tsykin, Gregory J. Goodall, Jeffrey E. Green, Min Zhu, Chang-Hee Kim, Jiuyong Li. Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation |
| 3112 | -- | 3118 | Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann. Interoperability between phenotype and anatomy ontologies |
| 3119 | -- | 3124 | Alexie Papanicolaou, David G. Heckel. The GMOD Drupal Bioinformatic Server Framework |
| 3125 | -- | 3126 | Aaron Petkau, Matthew Stuart-Edwards, Paul Stothard, Gary H. Van Domselaar. Interactive microbial genome visualization with GView |
| 3127 | -- | 3128 | Li-Yeh Chuang, Jui-Hung Tsai, Cheng-Hong Yang. PPO: Predictor for Prokaryotic Operons |
| 3129 | -- | 3130 | Katherine J. L. Jackson, Scott Boyd, Bruno A. Gaëta, Andrew M. Collins. Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset |
| 3131 | -- | 3132 | Kevin Le Brigand, Karine Robbe-Sermesant, Bernard Mari, Pascal Barbry. MiRonTop: mining microRNAs targets across large scale gene expression studies |
| 3133 | -- | 3134 | Iain Milne, Paul Shaw, Gordon Stephen, Micha Bayer, Linda Cardle, William T. B. Thomas, Andrew J. Flavell, David Marshall. Flapjack - graphical genotype visualization |
| 3135 | -- | 3137 | Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng. GLay: community structure analysis of biological networks |
| 3138 | -- | 3139 | Gang Su, Brian D. Athey, Fan Meng. GSearcher: Agile Attribute Querying for Biological Networks |
| 3140 | -- | 3142 | Hadas Zur, Eytan Ruppin, Tomer Shlomi. iMAT: an integrative metabolic analysis tool |