| 147 | -- | 152 | Dong Dong, Xiaojian Shao, Zhaolei Zhang. Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective |
| 153 | -- | 160 | Giuseppe Narzisi, Bud Mishra. Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons |
| 161 | -- | 166 | Vito M. R. Muggeo, Giada Adelfio. Efficient change point detection for genomic sequences of continuous measurements |
| 175 | -- | 181 | Ahrim Youn, Richard Simon. Identifying cancer driver genes in tumor genome sequencing studies |
| 182 | -- | 188 | Panagiotis D. Vouzis, Nikolaos V. Sahinidis. GPU-BLAST: using graphics processors to accelerate protein sequence alignment |
| 189 | -- | 195 | Sanchit Misra, Ankit Agrawal, Wei-keng Liao, Alok N. Choudhary. Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing |
| 196 | -- | 203 | Fabio Gori, Gianluigi Folino, Mike S. M. Jetten, Elena Marchiori. MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks |
| 204 | -- | 210 | Tobias Hamp, Fabian Birzele, Fabian Buchwald, Stefan Kramer. Improving structure alignment-based prediction of SCOP families using Vorolign Kernels |
| 211 | -- | 219 | Stefan E. Seemann, Andreas S. Richter, Tanja Gesell, Rolf Backofen, Jan Gorodkin. PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences |
| 220 | -- | 224 | Gregory Riddick, Hua Song, Susie Ahn, Jennifer Walling, Diego Borges-Rivera, Wei Zhang, Howard A. Fine. Predicting ::::in vitro:::: drug sensitivity using Random Forests |
| 225 | -- | 231 | Hong-Qiang Wang, Lindsey K. Tuominen, Chung-Jui Tsai. SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures |
| 232 | -- | 237 | Darong Lai, Xinyi Yang, Gang Wu, Yuanhua Liu, Christine Nardini. Inference of gene networks - application to ::::Bifidobacterium:::: |
| 238 | -- | 244 | Holger Fröhlich, Paurush Praveen, Achim Tresch. Fast and efficient dynamic nested effects models |
| 245 | -- | 251 | Tae-Hwan Kim, Junil Kim, Pat Heslop-Harrison, Kwang-Hyun Cho. Evolutionary design principles and functional characteristics based on kingdom-specific network motifs |
| 252 | -- | 258 | Isabel A. Nepomuceno-Chamorro, Francisco Azuaje, Yvan Devaux, Petr V. Nazarov, Arnaud Muller, Jesús S. Aguilar-Ruiz, Daniel R. Wagner. Prognostic transcriptional association networks: a new supervised approach based on regression trees |
| 259 | -- | 265 | Quoc-Chinh Bui, Sophia Katrenko, Peter M. A. Sloot. A hybrid approach to extract protein-protein interactions |
| 266 | -- | 267 | Qing Yu, Elizabeth M. Ryan, Todd M. Allen, Bruce W. Birren, Matthew R. Henn, Niall J. Lennon. PriSM: a primer selection and matching tool for amplification and sequencing of viral genomes |
| 268 | -- | 269 | Valentina Boeva, Andrei Zinovyev, Kevin Bleakley, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot. Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization |
| 270 | -- | 271 | Simon J. van Heeringen, Gert Jan C. Veenstra. de novo motif prediction pipeline for ChIP-sequencing experiments |
| 272 | -- | 274 | Ryan Koehler, Hadar Issac, Nicole Cloonan, Sean M. Grimmond. The uniqueome: a mappability resource for short-tag sequencing |
| 275 | -- | 276 | Paulo C. Carvalho, Juliana S. G. Fischer, Jonas Perales, John R. Yates III, Valmir C. Barbosa, Elias Bareinboim. Analyzing marginal cases in differential shotgun proteomics |
| 277 | -- | 278 | Emese Meglécz, Sylvain Piry, Erick Desmarais, Maxime Galan, André Gilles, Emmanuel Guivier, Nicolas Pech, Jean-François Martin. SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing |
| 279 | -- | 280 | Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer. PLEXY: efficient target prediction for box C/D snoRNAs |
| 281 | -- | 283 | Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein. RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries |
| 284 | -- | 285 | Nicholas A. Davis, Ahwan Pandey, Brett A. McKinney. Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS |
| 286 | -- | 287 | Rebecca Rooke, Guojun Yang. TE Displayer for post-genomic analysis of transposable elements |
| 288 | -- | 290 | Matthias Vigelius, Aidan Lane, Bernd Meyer. Accelerating reaction-diffusion simulations with general-purpose graphics processing units |