Stefan E. Seemann - researchr alias

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Viewing Publication 1 - 7 from 7

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databasesBlake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang 0002, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg. nar, 49(Database-Issue), 2021. [doi]

2017

RNAscClust: clustering RNA sequences using structure conservation and graph based motifsMilad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen. bioinformatics, 33(14):2089-2096, 2017. [doi]

2013

The RNAsnp web server: predicting SNP effects on local RNA secondary structureRadhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin. nar, 41(Webserver-Issue):475-479, 2013. [doi]

2012

RILogo: visualizing RNA-RNA interactionsPeter Menzel, Stefan E. Seemann, Jan Gorodkin. bioinformatics, 28(19):2523-2526, 2012. [doi]

2011

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequencesStefan E. Seemann, Peter Menzel, Rolf Backofen, Jan Gorodkin. nar, 39(Web-Server-Issue):107-111, 2011. [doi]

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequencesStefan E. Seemann, Andreas S. Richter, Tanja Gesell, Rolf Backofen, Jan Gorodkin. bioinformatics, 27(2):211-219, 2011. [doi]

2010

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactionsStefan E. Seemann, Andreas S. Richter, Jan Gorodkin, Rolf Backofen. almob, 5:22, 2010. [doi]

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